Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PCDHB3Q9Y5E6 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SNORD73B-201ENST00000364394 72 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SNORA72.4-201ENST00000384174 132 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 MIR518D-201ENST00000385014 87 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 MT-TT-201ENST00000387460 66 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SNORA75.5-201ENST00000391291 81 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AL078599.1-201ENST00000402075 293 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 RPL37P18-201ENST00000411602 243 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 RPS20P14-201ENST00000412545 360 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 RPS26P42-201ENST00000413485 326 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SRSF1P1-201ENST00000424058 520 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AL714022.1-201ENST00000439897 151 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AC007969.2-201ENST00000441891 191 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 RN7SL222P-201ENST00000476452 299 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SNORD116-26-201ENST00000516006 96 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 MIR4646-201ENST00000580775 63 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 RN7SL708P-201ENST00000580952 299 ntBASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PCDHB3Q9Y5E6 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 SNORD56.1-201ENST00000362913 68 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 SNORA66-201ENST00000384792 133 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 MIR153-1-201ENST00000384914 90 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 MIR526A2-201ENST00000390198 65 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 MIR550A3-201ENST00000390735 95 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AC074117.2-201ENST00000417130 397 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AC108075.1-201ENST00000424692 529 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 RPS29P24-201ENST00000486345 171 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AC023424.1-201ENST00000496058 459 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 MLLT10P2-201ENST00000506434 249 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 RNA5SP291-201ENST00000517222 105 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 MIR3921-201ENST00000577308 85 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 Y_RNA.757-201ENST00000578934 114 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AC090132.2-201ENST00000615881 347 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 AL034549.2-201ENST00000618285 3373 ntBASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PCDHB3Q9Y5E6 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 MIR450A1-201ENST00000362262 91 ntBASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 Y_RNA.35-201ENST00000362601 101 ntBASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 RNA5SP305-201ENST00000362665 119 ntBASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 Y_RNA.116-201ENST00000363292 103 ntBASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 U8.4-201ENST00000363626 134 ntBASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 SNORD116-21-201ENST00000384507 92 ntBASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.17□□□□□ -1.58
PCDHB3Q9Y5E6 RNA5SP487-201ENST00000410186 122 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms