Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC098614.2-201ENST00000426040 255 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 CEACAMP7-201ENST00000444105 496 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC073850.1-201ENST00000449243 255 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 RPL23AP75-201ENST00000491601 451 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 RNU5F-8P-201ENST00000515941 111 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 TRAV28-201ENST00000557548 323 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC093249.4-201ENST00000564755 259 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC008749.1-201ENST00000597650 306 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC108706.1-201ENST00000611053 297 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AL023881.1-201ENST00000621088 301 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 SCARNA4-202ENST00000625402 129 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 ZFRP1-201ENST00000457579 2970 ntBASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.31□□□□□ -1.72
HIF3AQ9Y2N7 AC139713.2-214ENST00000642059 1811 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 RNA5SP305-201ENST00000362665 119 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-78P-201ENST00000362897 107 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 Y_RNA.343-201ENST00000365354 112 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 SPTLC1P2-201ENST00000407089 121 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 RNU5A-5P-201ENST00000411054 116 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 RPL17P36-201ENST00000420302 549 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 SNORA31.8-201ENST00000516327 108 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 SNORA70.16-201ENST00000516390 95 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 MIR5699-201ENST00000578903 90 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 AC005828.6-201ENST00000606610 232 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 AP002799.1-201ENST00000623552 423 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 SCARNA4-201ENST00000629045 128 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
HIF3AQ9Y2N7 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AL592182.3-201ENST00000642132 3304 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 Y_RNA.272-201ENST00000364696 102 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 RNU6-72P-201ENST00000384285 79 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 U3.30-201ENST00000391308 210 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC093162.1-201ENST00000419682 124 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 COX6B1P7-201ENST00000430845 235 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC124916.1-201ENST00000444020 547 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 SSXP4-201ENST00000451349 245 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC008953.1-201ENST00000497334 318 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 BTF3L4P4-201ENST00000506381 449 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 SNORA27.4-201ENST00000516650 95 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC053481.4-201ENST00000583164 216 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC022726.1-201ENST00000587475 207 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 RPL23AP88-201ENST00000605759 454 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC073349.3-201ENST00000617616 186 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AC126323.6-202ENST00000568092 3511 ntBASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
HIF3AQ9Y2N7 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 UBE2WP1-201ENST00000362030 340 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 MIR410-201ENST00000362222 80 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AL590762.2-201ENST00000395798 571 ntBASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.28□□□□□ -1.72
HIF3AQ9Y2N7 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms