Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 IMMP1LP2-201ENST00000552954 492 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 ZNF192P1-203ENST00000565888 810 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 MIR4644-201ENST00000579929 84 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 MIR3200-201ENST00000580767 85 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 BRDTP1-201ENST00000605735 677 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 RNU6-85P-201ENST00000605989 107 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC126177.8-201ENST00000618339 1015 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AC099506.2-201ENST00000623074 221 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AP003355.3-201ENST00000623465 114 ntBASIC3.7□□□□□ -1.82
TDP1Q9NUW8 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.7□□□□□ -1.82
TDP1Q9NUW8 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 FTLP6-201ENST00000355274 422 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 SNORD14B-201ENST00000364533 90 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 RNU6-370P-201ENST00000411008 104 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AL354751.2-201ENST00000415471 210 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 MTCO2P27-201ENST00000420740 428 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC008155.2-201ENST00000464337 397 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC025518.1-201ENST00000479856 347 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC069499.1-201ENST00000489433 509 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC026801.1-201ENST00000497178 464 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 SNORA31.19-201ENST00000517079 126 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.718-201ENST00000517110 102 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC026371.1-201ENST00000551867 419 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 ANP32BP3-201ENST00000559213 706 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC100830.2-201ENST00000581636 240 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AL627309.6-201ENST00000606857 840 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AC027309.3-201ENST00000623419 351 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 NCAPGP1-201ENST00000505112 1814 ntBASIC3.69□□□□□ -1.82
TDP1Q9NUW8 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
TDP1Q9NUW8 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RNU4-35P-201ENST00000362588 141 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RNU6-214P-201ENST00000384130 107 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RNU6-217P-201ENST00000384164 104 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RNU6-95P-201ENST00000384697 107 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 SNORA40C-201ENST00000391285 128 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.623-201ENST00000411128 95 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RNU6-1304P-201ENST00000411374 106 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AF228730.4-201ENST00000421457 183 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 NDUFB1P2-201ENST00000449477 176 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RPL12P25-201ENST00000455592 494 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 BX510359.1-201ENST00000456973 237 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 U3.44-201ENST00000458938 192 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC096745.1-201ENST00000509945 370 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC092436.3-201ENST00000511788 257 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 APOOP3-201ENST00000536787 586 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 SYF2P1-201ENST00000550658 413 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 FTX_3.1-201ENST00000610451 147 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC103858.2-201ENST00000621471 543 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 U4.6-201ENST00000621618 127 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 AC118273.1-201ENST00000525324 3006 ntBASIC3.68□□□□□ -1.82
TDP1Q9NUW8 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
TDP1Q9NUW8 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.482-201ENST00000384377 111 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 RNY4P36-201ENST00000391116 96 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC016831.2-201ENST00000417179 352 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 BRK1P2-201ENST00000442875 223 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 RPL9P32-201ENST00000464118 620 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 RNU1-61P-201ENST00000516107 151 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 RNU6-572P-201ENST00000516724 80 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 CBX3P7-201ENST00000532876 502 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms