Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MIR2114-201ENST00000516645 80 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 RNU6-928P-201ENST00000516876 104 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 RNU6-1314P-201ENST00000517139 104 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AC025755.1-201ENST00000521306 278 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AC011602.1-201ENST00000546484 331 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 OR11H5P-201ENST00000554039 926 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 UBE2V2P2-201ENST00000587677 504 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 Y_RNA.804-201ENST00000615262 101 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AC068831.7-201ENST00000616954 363 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AC073308.1-201ENST00000623696 305 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AC022418.1-201ENST00000624118 445 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 U6.99-201ENST00000637524 83 ntBASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.36□□□□□ -1.87
PAAF1Q9BRP4 RNA5SP295-201ENST00000362655 121 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 Y_RNA.70-201ENST00000362886 110 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 SNORA80A-201ENST00000363922 136 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 Y_RNA.279-201ENST00000364763 95 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 Y_RNA.399-201ENST00000383955 105 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 RNU6-217P-201ENST00000384164 104 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 Y_RNA.530-201ENST00000384587 101 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 USP9YP8-201ENST00000441913 500 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 RPL21P93-201ENST00000480465 489 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC096576.1-201ENST00000489014 359 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 HMGN1P12-201ENST00000499125 195 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 MTND3P25-201ENST00000509243 135 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 PSMA3P-201ENST00000555485 635 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC005668.1-201ENST00000571142 476 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 LARP7P3-201ENST00000579888 337 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 MIR3941-201ENST00000582572 103 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 MIR3609-201ENST00000582661 80 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 FTX_3.1-201ENST00000610451 147 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC104260.1-201ENST00000616660 539 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC009248.2-201ENST00000619826 254 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC022336.2-201ENST00000568966 2538 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 AC002546.1-201ENST00000588041 2504 ntBASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.35□□□□□ -1.87
PAAF1Q9BRP4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 RNU6-522P-201ENST00000364497 107 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 SNORD6-201ENST00000365444 73 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 RNU6-1035P-201ENST00000384477 107 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 EIF4E2P1-201ENST00000393781 255 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 HMGN2P30-201ENST00000423237 256 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 TOMM20P4-201ENST00000427861 435 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC025750.2-201ENST00000442609 450 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AL360271.2-201ENST00000447710 161 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AP000852.1-201ENST00000472460 573 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC079140.5-201ENST00000507882 310 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 RNU6-507P-201ENST00000516045 100 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 RNU6-572P-201ENST00000516724 80 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC107953.1-201ENST00000522216 297 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC087241.2-201ENST00000535801 324 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC006111.3-201ENST00000622137 383 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 AC091903.1-201ENST00000624322 454 ntBASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.87
PAAF1Q9BRP4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
PAAF1Q9BRP4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.34□□□□□ -1.88
PAAF1Q9BRP4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PAAF1Q9BRP4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 AC118273.1-201ENST00000525324 3006 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 MIR412-201ENST00000362142 91 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RNU6-845P-201ENST00000362578 103 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 Y_RNA.480-201ENST00000384364 102 ntBASIC3.33□□□□□ -1.88
PAAF1Q9BRP4 RNU6-1009P-201ENST00000390996 107 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms