Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC104136.1-201ENST00000512969 394 ntBASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 RNU2-69P-201ENST00000516061 100 ntBASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 RNU6-256P-201ENST00000516747 97 ntBASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 RNU6-566P-201ENST00000516790 107 ntBASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 MIR3672-201ENST00000584290 82 ntBASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 SDAD1P2-201ENST00000441308 2028 ntBASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.05□□□□□ -1.92
CLIP4Q8N3C7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 MIR134-201ENST00000385258 73 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 MIR591-201ENST00000385290 95 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RPS4XP7-201ENST00000406274 780 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RNA5SP44-201ENST00000410446 133 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RN7SKP27-201ENST00000410684 333 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RPS29P4-201ENST00000414733 161 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 BTF3L4P3-201ENST00000418879 476 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AL451062.2-201ENST00000427515 271 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 SAR1AP4-201ENST00000429225 591 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RNU7-167P-201ENST00000459160 62 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 TRBVA-201ENST00000498804 316 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RNU1-143P-201ENST00000516296 146 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RNU6-914P-201ENST00000516749 109 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AC007458.1-201ENST00000542812 373 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AC090115.3-201ENST00000553218 849 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 MIR3921-201ENST00000577308 85 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 MIR3941-201ENST00000582572 103 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 POLR3GP2-201ENST00000588366 668 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AC002545.1-201ENST00000592511 181 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AL162713.1-201ENST00000604480 262 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AL133255.1-201ENST00000606374 441 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AC064836.2-201ENST00000609491 462 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 U1.23-201ENST00000610293 146 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 AL110115.1-201ENST00000614396 364 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RNU1-68P-201ENST00000615382 146 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 SNORD39.4-201ENST00000620099 78 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 U1.39-201ENST00000621562 146 ntBASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CLIP4Q8N3C7 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC093908.1-201ENST00000623125 8092 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 MTND5P19-201ENST00000424872 1794 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 UBE2L2-201ENST00000254302 429 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 RNA5SP119-201ENST00000362715 117 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 Y_RNA.339-201ENST00000365325 102 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 Y_RNA.394-201ENST00000383942 103 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 MIR450B-201ENST00000401182 78 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 MIR548F5-201ENST00000408421 86 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 VN1R36P-201ENST00000414936 291 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 UBE2D3P2-201ENST00000424409 445 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC091390.3-201ENST00000426478 338 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 CST9LP2-201ENST00000437612 320 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 RPL21P41-201ENST00000459863 264 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC087588.1-201ENST00000462203 316 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AP002812.1-201ENST00000495378 474 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC009901.1-201ENST00000506703 541 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AL359273.1-201ENST00000510918 627 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 RNU6-559P-201ENST00000516151 98 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 SCARNA20.6-201ENST00000517251 106 ntBASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.03□□□□□ -1.92
CLIP4Q8N3C7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms