Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC074344.1-201ENST00000512823 224 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.79□□□□□ -1.8
HMGB1P09429 MTCO2P4-201ENST00000517968 247 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AL356057.1-201ENST00000533798 831 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.79□□□□□ -1.8
HMGB1P09429 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.79□□□□□ -1.8
HMGB1P09429 AC073648.5-201ENST00000603502 305 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AL355297.2-201ENST00000604792 129 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 AC069200.1-201ENST00000609511 323 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 MIR7975-201ENST00000619350 68 ntBASIC3.79□□□□□ -1.8
HMGB1P09429 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.79□□□□□ -1.8
HMGB1P09429 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HMGB1P09429 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.79□□□□□ -1.8
HMGB1P09429 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.78□□□□□ -1.8
HMGB1P09429 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HMGB1P09429 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HMGB1P09429 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
HMGB1P09429 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.78□□□□□ -1.8
HMGB1P09429 RNU6-715P-201ENST00000365204 103 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 SNORA75-201ENST00000384158 137 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.78□□□□□ -1.8
HMGB1P09429 MTCO2P11-201ENST00000431069 680 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.78□□□□□ -1.8
HMGB1P09429 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.78□□□□□ -1.8
HMGB1P09429 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.78□□□□□ -1.8
HMGB1P09429 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.78□□□□□ -1.8
HMGB1P09429 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.78□□□□□ -1.8
HMGB1P09429 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.78□□□□□ -1.8
HMGB1P09429 CR383656.8-201ENST00000549046 145 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.78□□□□□ -1.8
HMGB1P09429 MIR4444-1-201ENST00000581696 74 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 MIR4444-2-201ENST00000584390 74 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC012119.1-201ENST00000603184 222 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.78□□□□□ -1.8
HMGB1P09429 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 uc_338.25-201ENST00000613756 156 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC091834.1-201ENST00000614543 472 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AP001486.3-201ENST00000615334 372 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 AC090582.1-201ENST00000636321 199 ntBASIC3.78□□□□□ -1.8
HMGB1P09429 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
HMGB1P09429 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.78□□□□□ -1.8
HMGB1P09429 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
HMGB1P09429 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HMGB1P09429 RNU1-52P-201ENST00000384190 164 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 RNU4-47P-201ENST00000410876 114 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC132479.1-201ENST00000449160 144 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.77□□□□□ -1.81
HMGB1P09429 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.77□□□□□ -1.81
HMGB1P09429 AC104136.1-201ENST00000512969 394 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC010493.1-201ENST00000513479 292 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 SNORA43.2-201ENST00000516652 128 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.77□□□□□ -1.81
HMGB1P09429 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.77□□□□□ -1.81
HMGB1P09429 BNIP3P6-201ENST00000549284 499 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 PSMA3P-201ENST00000555485 635 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC027176.1-201ENST00000560204 514 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC105137.2-201ENST00000569073 466 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC073410.2-201ENST00000603240 332 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
HMGB1P09429 AC100793.4-201ENST00000613683 429 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 AC009233.1-201ENST00000616477 371 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.77□□□□□ -1.81
HMGB1P09429 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.77□□□□□ -1.81
HMGB1P09429 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HMGB1P09429 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HMGB1P09429 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HMGB1P09429 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
HMGB1P09429 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.76□□□□□ -1.81
HMGB1P09429 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 MIR7-3-201ENST00000384898 110 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 U3.19-201ENST00000390893 196 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 RNU4-46P-201ENST00000410818 138 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.76□□□□□ -1.81
HMGB1P09429 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.76□□□□□ -1.81
HMGB1P09429 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
HMGB1P09429 AC091153.1-201ENST00000466297 402 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.76□□□□□ -1.81
HMGB1P09429 AC008526.1-201ENST00000509149 338 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.76□□□□□ -1.81
HMGB1P09429 RN7SKP298-201ENST00000515950 94 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 RNU1-104P-201ENST00000517280 175 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.76□□□□□ -1.81
HMGB1P09429 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.76□□□□□ -1.81
HMGB1P09429 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.76□□□□□ -1.81
HMGB1P09429 AC136619.2-201ENST00000563361 631 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 MIR4703-201ENST00000577728 79 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.76□□□□□ -1.81
HMGB1P09429 RSL24D1P11-201ENST00000591045 491 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 RPL12P50-201ENST00000603116 116 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 AC025449.1-201ENST00000603896 529 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 RN7SKP299-201ENST00000606679 301 ntBASIC3.76□□□□□ -1.81
HMGB1P09429 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
HMGB1P09429 MIR6075-201ENST00000620782 95 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms