Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SNORA72.2-201ENST00000365028 127 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 Y_RNA.308-201ENST00000365043 101 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 MIR544A-201ENST00000384855 91 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 MIR493-201ENST00000385254 89 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 RPS26P42-201ENST00000413485 326 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 HMGN2P27-201ENST00000427352 270 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AC005154.2-201ENST00000438110 379 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AC012308.1-201ENST00000451232 178 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AC074133.1-201ENST00000515696 183 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 NACAP3-201ENST00000552100 481 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 KLKP1-201ENST00000595979 403 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 RAD17P1-201ENST00000418130 2042 ntBASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIMD1Q9UGP4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
LIMD1Q9UGP4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIMD1Q9UGP4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIMD1Q9UGP4 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIMD1Q9UGP4 AC135776.4-201ENST00000624300 1904 ntBASIC5.21□□□□□ -1.57
LIMD1Q9UGP4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 Y_RNA.441-201ENST00000384123 112 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 RNA5SP296-201ENST00000410523 111 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 BX323845.1-201ENST00000432417 179 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 AL354714.3-201ENST00000447284 493 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 SNRPGP7-201ENST00000469016 106 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 AC078918.1-201ENST00000498515 228 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 CKS1BP7-201ENST00000522230 235 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 AC233702.2-202ENST00000562547 291 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 MIR4715-201ENST00000584117 79 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 AC104465.1-201ENST00000611365 139 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 BMS1P21-201ENST00000634565 365 ntBASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIMD1Q9UGP4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 Y_RNA.217-201ENST00000364214 105 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 AC112220.1-201ENST00000434628 355 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 Y_RNA.641-201ENST00000459414 105 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 MTND5P41-201ENST00000517498 206 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 HSPE1P5-201ENST00000561489 272 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 MIR5692C2-201ENST00000577959 77 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 AC108738.1-201ENST00000603703 237 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 AL445487.1-201ENST00000415694 1580 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 ZNF204P-201ENST00000416749 2397 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 AC006484.1-201ENST00000435086 1884 ntBASIC5.2□□□□□ -1.58
LIMD1Q9UGP4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 DLEU2_6.3-201ENST00000340052 136 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 Y_RNA.398-201ENST00000383952 99 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 RNU6-1117P-201ENST00000384525 104 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 MIR607-201ENST00000385241 96 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 MIR1193-201ENST00000408109 78 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 BMS1P22-201ENST00000414726 313 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 RPL7AP49-201ENST00000429522 581 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 AL591438.1-201ENST00000433508 581 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 RN7SL41P-201ENST00000476144 297 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 AC020593.1-201ENST00000507399 299 ntBASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC5.19□□□□□ -1.58
LIMD1Q9UGP4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms