Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SDC4P31431 ZNF680P1-201ENST00000436625 1469 ntBASIC1.05□□□□□ -2.24
SDC4P31431 RNU6-582P-201ENST00000362989 107 ntBASIC1.05□□□□□ -2.24
SDC4P31431 RNU6-14P-201ENST00000384630 106 ntBASIC1.05□□□□□ -2.24
SDC4P31431 RNU2-68P-201ENST00000410878 191 ntBASIC1.05□□□□□ -2.24
SDC4P31431 MRPL35P3-201ENST00000421557 364 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.05□□□□□ -2.24
SDC4P31431 MTND2P5-201ENST00000432656 1006 ntBASIC1.05□□□□□ -2.24
SDC4P31431 USP9YP24-201ENST00000434374 697 ntBASIC1.05□□□□□ -2.24
SDC4P31431 USP9YP35-201ENST00000435696 412 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AL354941.1-201ENST00000438600 464 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.05□□□□□ -2.24
SDC4P31431 AC132942.1-201ENST00000486753 483 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AL160314.1-201ENST00000490836 438 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.05□□□□□ -2.24
SDC4P31431 BOLA3P3-201ENST00000505182 232 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.05□□□□□ -2.24
SDC4P31431 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.05□□□□□ -2.24
SDC4P31431 LARP7P2-201ENST00000575306 125 ntBASIC1.05□□□□□ -2.24
SDC4P31431 MIR3167-201ENST00000579623 85 ntBASIC1.05□□□□□ -2.24
SDC4P31431 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.05□□□□□ -2.24
SDC4P31431 AC011939.3-201ENST00000613686 466 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AL603758.1-201ENST00000618654 241 ntBASIC1.05□□□□□ -2.24
SDC4P31431 AC004009.2-201ENST00000623016 728 ntBASIC1.05□□□□□ -2.24
SDC4P31431 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.05□□□□□ -2.24
SDC4P31431 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
SDC4P31431 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
SDC4P31431 SNORA62.1-201ENST00000364287 154 ntBASIC1.04□□□□□ -2.24
SDC4P31431 RNU4-38P-201ENST00000364472 129 ntBASIC1.04□□□□□ -2.24
SDC4P31431 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
SDC4P31431 AL136133.1-201ENST00000413694 376 ntBASIC1.04□□□□□ -2.24
SDC4P31431 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.04□□□□□ -2.24
SDC4P31431 C1DP1-201ENST00000426049 402 ntBASIC1.04□□□□□ -2.24
SDC4P31431 PTGES3P4-201ENST00000426243 356 ntBASIC1.04□□□□□ -2.24
SDC4P31431 NANOGP2-201ENST00000435391 727 ntBASIC1.04□□□□□ -2.24
SDC4P31431 PTGES3P1-201ENST00000439531 483 ntBASIC1.04□□□□□ -2.24
SDC4P31431 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.04□□□□□ -2.24
SDC4P31431 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.04□□□□□ -2.24
SDC4P31431 AC244505.5-201ENST00000443639 207 ntBASIC1.04□□□□□ -2.24
SDC4P31431 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
SDC4P31431 FCF1P6-201ENST00000456841 595 ntBASIC1.04□□□□□ -2.24
SDC4P31431 OR2A41P-201ENST00000473586 105 ntBASIC1.04□□□□□ -2.24
SDC4P31431 RPS3AP22-201ENST00000488297 769 ntBASIC1.04□□□□□ -2.24
SDC4P31431 AC139453.3-201ENST00000493276 369 ntBASIC1.04□□□□□ -2.24
SDC4P31431 AC093677.1-201ENST00000514414 678 ntBASIC1.04□□□□□ -2.24
SDC4P31431 RNA5SP445-201ENST00000515889 115 ntBASIC1.04□□□□□ -2.24
SDC4P31431 AC135279.1-201ENST00000543493 504 ntBASIC1.04□□□□□ -2.24
SDC4P31431 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC1.04□□□□□ -2.24
SDC4P31431 RPL21P5-201ENST00000554662 472 ntBASIC1.04□□□□□ -2.24
SDC4P31431 ROCK1P1-201ENST00000573767 549 ntBASIC1.04□□□□□ -2.24
SDC4P31431 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.04□□□□□ -2.24
SDC4P31431 AC002545.1-201ENST00000592511 181 ntBASIC1.04□□□□□ -2.24
SDC4P31431 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.04□□□□□ -2.24
SDC4P31431 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
SDC4P31431 RNU5E-1-201ENST00000362477 120 ntBASIC1.03□□□□□ -2.24
SDC4P31431 RNU1-22P-201ENST00000363334 158 ntBASIC1.03□□□□□ -2.24
SDC4P31431 RNU5E-8P-201ENST00000363502 116 ntBASIC1.03□□□□□ -2.24
SDC4P31431 RPL21P90-201ENST00000415692 466 ntBASIC1.03□□□□□ -2.24
SDC4P31431 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.03□□□□□ -2.24
SDC4P31431 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.03□□□□□ -2.24
SDC4P31431 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.03□□□□□ -2.24
SDC4P31431 ARPC3P5-201ENST00000448802 534 ntBASIC1.03□□□□□ -2.24
SDC4P31431 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC1.03□□□□□ -2.24
SDC4P31431 RNU6-1053P-201ENST00000515930 101 ntBASIC1.03□□□□□ -2.24
SDC4P31431 RNU6-528P-201ENST00000516926 100 ntBASIC1.03□□□□□ -2.24
SDC4P31431 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.03□□□□□ -2.24
SDC4P31431 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.03□□□□□ -2.24
SDC4P31431 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.03□□□□□ -2.24
SDC4P31431 AC090079.2-201ENST00000575289 768 ntBASIC1.03□□□□□ -2.24
SDC4P31431 AC005951.2-201ENST00000576282 495 ntBASIC1.03□□□□□ -2.24
SDC4P31431 AC008121.3-201ENST00000618726 433 ntBASIC1.03□□□□□ -2.24
SDC4P31431 AC080188.3-201ENST00000624842 748 ntBASIC1.03□□□□□ -2.24
SDC4P31431 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.03□□□□□ -2.24
SDC4P31431 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
SDC4P31431 SNORD115-3-201ENST00000363100 82 ntBASIC1.02□□□□□ -2.25
SDC4P31431 SNORA25.8-201ENST00000364831 128 ntBASIC1.02□□□□□ -2.25
SDC4P31431 MIR518D-201ENST00000385014 87 ntBASIC1.02□□□□□ -2.25
SDC4P31431 MTCO2P31-201ENST00000402702 684 ntBASIC1.02□□□□□ -2.25
SDC4P31431 MIR1302-8-201ENST00000408342 128 ntBASIC1.02□□□□□ -2.25
SDC4P31431 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.02□□□□□ -2.25
SDC4P31431 RAC1P8-201ENST00000427086 527 ntBASIC1.02□□□□□ -2.25
SDC4P31431 MTCYBP32-201ENST00000427945 1084 ntBASIC1.02□□□□□ -2.25
SDC4P31431 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.02□□□□□ -2.25
SDC4P31431 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SDC4P31431 AC005908.1-201ENST00000468701 347 ntBASIC1.02□□□□□ -2.25
SDC4P31431 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.02□□□□□ -2.25
SDC4P31431 RNU6-885P-201ENST00000516607 104 ntBASIC1.02□□□□□ -2.25
SDC4P31431 RNU6-840P-201ENST00000517275 65 ntBASIC1.02□□□□□ -2.25
SDC4P31431 CYB5AP5-201ENST00000549779 389 ntBASIC1.02□□□□□ -2.25
SDC4P31431 NIFKP8-201ENST00000560500 874 ntBASIC1.02□□□□□ -2.25
SDC4P31431 AC010900.2-201ENST00000604508 210 ntBASIC1.02□□□□□ -2.25
SDC4P31431 AL163051.2-201ENST00000618976 735 ntBASIC1.02□□□□□ -2.25
SDC4P31431 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
SDC4P31431 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.01□□□□□ -2.25
SDC4P31431 AC005539.1-201ENST00000443768 1479 ntBASIC1.01□□□□□ -2.25
SDC4P31431 MIR618-201ENST00000385287 98 ntBASIC1.01□□□□□ -2.25
SDC4P31431 RNU1-78P-201ENST00000391248 165 ntBASIC1.01□□□□□ -2.25
SDC4P31431 AC127391.1-201ENST00000411737 98 ntBASIC1.01□□□□□ -2.25
SDC4P31431 AP000275.1-201ENST00000411943 390 ntBASIC1.01□□□□□ -2.25
SDC4P31431 AL353621.1-201ENST00000418219 243 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 401.3 ms