| CHCHD4 | Q8N4Q1 | AL365184.2-201 | ENST00000431139 | 435 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | BRK1P2-201 | ENST00000442875 | 223 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL118523.1-201 | ENST00000444436 | 480 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | ST13P20-201 | ENST00000447996 | 1065 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC013269.3-201 | ENST00000450486 | 444 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | LINC01038-201 | ENST00000457858 | 428 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RPL9P33-201 | ENST00000484311 | 566 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RPS29P21-201 | ENST00000496272 | 170 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC082650.1-201 | ENST00000503542 | 575 nt | TSL 4 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC012312.1-201 | ENST00000503710 | 527 nt | TSL 2 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC097478.1-204 | ENST00000509723 | 547 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | MRPS33P3-201 | ENST00000513456 | 322 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU6-1183P-201 | ENST00000517054 | 60 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | MS4A4E-204 | ENST00000526086 | 460 nt | TSL 1 (best) BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AP003498.1-201 | ENST00000532530 | 347 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC018410.2-201 | ENST00000540410 | 610 nt | TSL 5 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL138976.2-201 | ENST00000563989 | 694 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC022809.1-201 | ENST00000579247 | 428 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC069114.1-201 | ENST00000580927 | 287 nt | TSL 2 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | ZNF788-206 | ENST00000596883 | 692 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC018638.7-201 | ENST00000605836 | 1114 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL355472.4-201 | ENST00000610233 | 626 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC023490.3-201 | ENST00000621762 | 358 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC244517.12-201 | ENST00000623581 | 663 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AF246928.1-201 | ENST00000623768 | 87 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | U6.99-201 | ENST00000637524 | 83 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AP000550.4-201 | ENST00000639507 | 358 nt | TSL 3 BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL445523.1-201 | ENST00000451184 | 1362 nt | BASIC | 2.7 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | SAGE1-201 | ENST00000324447 | 2952 nt | APPRIS P2 TSL 5 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RTL4-201 | ENST00000340433 | 2613 nt | APPRIS P1 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | KLRF1-202 | ENST00000354855 | 838 nt | TSL 1 (best) BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU5F-6P-201 | ENST00000362979 | 116 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | CRISP3-203 | ENST00000371159 | 872 nt | APPRIS ALT2 TSL 5 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU6-533P-201 | ENST00000384144 | 107 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU6-817P-201 | ENST00000391083 | 104 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | MTCYBP36-201 | ENST00000404146 | 440 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | SNORD23.1-201 | ENST00000408212 | 104 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RN7SKP158-201 | ENST00000410453 | 326 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC078974.1-201 | ENST00000411597 | 223 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC006366.1-201 | ENST00000422002 | 759 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC064852.1-201 | ENST00000427571 | 851 nt | TSL 3 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | GDI2P2-201 | ENST00000445131 | 608 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AP000477.2-201 | ENST00000447405 | 778 nt | TSL 3 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | ZNF736P5Y-201 | ENST00000451173 | 805 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC005703.2-201 | ENST00000453339 | 343 nt | TSL 2 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC116666.1-201 | ENST00000453915 | 551 nt | TSL 5 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC093110.1-201 | ENST00000456363 | 602 nt | TSL 2 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | OARD1-209 | ENST00000471367 | 401 nt | TSL 2 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC112204.1-201 | ENST00000502591 | 103 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC008526.1-201 | ENST00000509149 | 338 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AF213884.2-201 | ENST00000510417 | 903 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | Y_RNA.676-201 | ENST00000516393 | 96 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | ELOCP31-201 | ENST00000540463 | 467 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC027176.1-201 | ENST00000560204 | 514 nt | BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | EFCAB3-202 | ENST00000450662 | 1694 nt | TSL 5 BASIC | 2.69 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | SNORA6-201 | ENST00000384033 | 151 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RPS20P2-201 | ENST00000402520 | 389 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | MIR1302-8-201 | ENST00000408342 | 128 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU2-63P-201 | ENST00000410792 | 194 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC004543.1-201 | ENST00000418764 | 369 nt | TSL 5 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL590730.1-201 | ENST00000426283 | 398 nt | TSL 3 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC093106.2-201 | ENST00000428212 | 385 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC244035.3-201 | ENST00000428399 | 271 nt | TSL 2 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL157937.1-201 | ENST00000435092 | 443 nt | TSL 3 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | TIMM9P1-201 | ENST00000436122 | 256 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL512286.1-201 | ENST00000439244 | 400 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | MTND1P30-201 | ENST00000441241 | 901 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC118469.1-201 | ENST00000442943 | 488 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | NEFMP1-201 | ENST00000443423 | 1006 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC092001.1-201 | ENST00000453012 | 261 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | snoU13.23-201 | ENST00000458863 | 104 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC046136.1-201 | ENST00000459855 | 533 nt | TSL 3 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RPL30P6-201 | ENST00000475925 | 342 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RPL39P36-201 | ENST00000490784 | 156 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AP002075.1-201 | ENST00000505091 | 603 nt | TSL 3 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU6-1003P-201 | ENST00000517099 | 105 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | TAS2R43-201 | ENST00000531678 | 1027 nt | APPRIS P1 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC092747.1-202 | ENST00000540595 | 380 nt | TSL 5 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC130415.1-201 | ENST00000547569 | 1010 nt | TSL 4 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC015712.3-201 | ENST00000559380 | 164 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC025165.5-201 | ENST00000602802 | 578 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | BNIP3P9-201 | ENST00000603714 | 553 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC079610.3-201 | ENST00000606960 | 147 nt | TSL 3 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL161423.1-201 | ENST00000613700 | 262 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC122133.1-201 | ENST00000613964 | 233 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | MIR7844-201 | ENST00000616161 | 122 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | CAPZA2-214 | ENST00000628758 | 525 nt | TSL 5 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | TEX21P-201 | ENST00000447107 | 1476 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | OR51A4-202 | ENST00000641898 | 4393 nt | APPRIS P1 BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | CDC27P3-201 | ENST00000635418 | 1910 nt | BASIC | 2.68 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | LTN1-201 | ENST00000361371 | 7685 nt | APPRIS P1 TSL 1 (best) BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | DDIAS-201 | ENST00000329143 | 3367 nt | APPRIS P2 TSL 1 (best) BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU6-188P-201 | ENST00000364207 | 107 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU6-701P-201 | ENST00000384059 | 107 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RNU2-62P-201 | ENST00000410868 | 191 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | RPS27L-202 | ENST00000411926 | 528 nt | TSL 3 BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AC006150.1-201 | ENST00000412014 | 263 nt | TSL 5 BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | Z98742.3-201 | ENST00000418637 | 326 nt | BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | AL445123.1-201 | ENST00000422023 | 446 nt | TSL 2 BASIC | 2.67 | □□□□□ -1.98 | | |
| CHCHD4 | Q8N4Q1 | LINC00392-201 | ENST00000430033 | 557 nt | TSL 3 BASIC | 2.67 | □□□□□ -1.98 | | |