Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A3Q01955 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC005357.1-201ENST00000588399 301 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AC006254.3-201ENST00000603353 884 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A3Q01955 U2.1-201ENST00000618978 145 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC006386.2-201ENST00000624491 75 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC012005.1-201ENST00000624575 75 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A3Q01955 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A3Q01955 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A3Q01955 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A3Q01955 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.68□□□□□ -1.82
COL4A3Q01955 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
COL4A3Q01955 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A3Q01955 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A3Q01955 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
COL4A3Q01955 RNU6-821P-201ENST00000390995 107 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RNU6-55P-201ENST00000411092 107 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RNU6-293P-201ENST00000411259 106 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RPL21P109-201ENST00000422213 475 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A3Q01955 AL669831.1-202ENST00000428504 417 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AL645568.3-201ENST00000433683 316 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 NDUFB1P1-201ENST00000435191 180 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 SNORD105B-201ENST00000458770 79 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RPL21P103-201ENST00000479921 488 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC092436.3-201ENST00000511788 257 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 SCARNA16.2-201ENST00000516520 172 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RNA5SP384-201ENST00000516615 116 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC011494.1-201ENST00000596454 237 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC100812.1-201ENST00000607622 580 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AC062037.2-201ENST00000610137 73 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 AL161423.1-201ENST00000613700 262 ntBASIC3.68□□□□□ -1.82
COL4A3Q01955 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A3Q01955 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A3Q01955 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.67□□□□□ -1.82
COL4A3Q01955 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
COL4A3Q01955 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A3Q01955 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.67□□□□□ -1.82
COL4A3Q01955 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.67□□□□□ -1.82
COL4A3Q01955 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A3Q01955 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
COL4A3Q01955 SNORA41-201ENST00000384675 132 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 RNU6-95P-201ENST00000384697 107 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 RNU2-23P-201ENST00000410545 195 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 RPS26P47-201ENST00000427219 348 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 AL359672.1-201ENST00000442302 409 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 NEFMP1-201ENST00000443423 1006 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 AL583843.1-201ENST00000456070 346 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 RNU6-388P-201ENST00000517012 105 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 RNU6-389P-201ENST00000517048 105 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 AL360157.1-201ENST00000565962 87 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.67□□□□□ -1.82
COL4A3Q01955 MIR4769-201ENST00000584126 77 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 HMGB1P24-202ENST00000615653 685 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A3Q01955 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A3Q01955 AL353743.1-202ENST00000431724 1695 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.67□□□□□ -1.82
COL4A3Q01955 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A3Q01955 PHKBP1-201ENST00000450951 1951 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 HSPA8P4-201ENST00000511877 1920 ntBASIC3.67□□□□□ -1.82
COL4A3Q01955 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A3Q01955 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL4A3Q01955 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A3Q01955 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A3Q01955 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
COL4A3Q01955 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.66□□□□□ -1.82
COL4A3Q01955 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A3Q01955 RNU6-823P-201ENST00000391042 103 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 MIR1250-201ENST00000408098 113 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.66□□□□□ -1.82
COL4A3Q01955 AC022616.4-201ENST00000522985 181 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 AP006587.4-201ENST00000526053 529 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.66□□□□□ -1.82
COL4A3Q01955 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.66□□□□□ -1.82
COL4A3Q01955 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.66□□□□□ -1.82
COL4A3Q01955 AC012119.1-201ENST00000603184 222 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 YPEL5P2-201ENST00000605553 359 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 MIR6130-201ENST00000619419 109 ntBASIC3.66□□□□□ -1.82
COL4A3Q01955 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
COL4A3Q01955 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL4A3Q01955 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.66□□□□□ -1.82
COL4A3Q01955 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A3Q01955 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A3Q01955 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.66□□□□□ -1.82
COL4A3Q01955 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.66□□□□□ -1.82
COL4A3Q01955 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL4A3Q01955 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
COL4A3Q01955 RNU6-989P-201ENST00000362756 107 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 RNU6-249P-201ENST00000363016 102 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 RNU6-288P-201ENST00000363690 104 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 Y_RNA.257-201ENST00000364596 102 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A3Q01955 RNU6-14P-201ENST00000384630 106 ntBASIC3.65□□□□□ -1.82
COL4A3Q01955 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms