Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CR392000.1-201ENST00000624770 1228 ntBASIC20.45■□□□□ 0.86
SIX2Q9NPC8 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
SIX2Q9NPC8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 ANO7L1-203ENST00000602586 1720 ntBASIC20.44■□□□□ 0.86
SIX2Q9NPC8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 MESTP1-201ENST00000404287 994 ntBASIC20.44■□□□□ 0.86
SIX2Q9NPC8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 AL353807.1-201ENST00000427475 662 ntBASIC20.44■□□□□ 0.86
SIX2Q9NPC8 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 AC011506.1-201ENST00000474329 610 ntBASIC20.44■□□□□ 0.86
SIX2Q9NPC8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.44■□□□□ 0.86
SIX2Q9NPC8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 KRT18P29-201ENST00000397031 1267 ntBASIC20.43■□□□□ 0.86
SIX2Q9NPC8 AC004951.3-201ENST00000418645 1148 ntBASIC20.43■□□□□ 0.86
SIX2Q9NPC8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 AC073195.1-201ENST00000607241 877 ntBASIC20.43■□□□□ 0.86
SIX2Q9NPC8 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
SIX2Q9NPC8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 PRSS44-201ENST00000515154 1146 ntBASIC20.42■□□□□ 0.86
SIX2Q9NPC8 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.42■□□□□ 0.86
SIX2Q9NPC8 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.42■□□□□ 0.86
SIX2Q9NPC8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX2Q9NPC8 AC026271.3-201ENST00000571884 352 ntBASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms