Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 AC116562.4-201ENST00000641316 2276 ntBASIC18.9■□□□□ 0.62
VPS35Q96QK1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS35Q96QK1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
VPS35Q96QK1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS35Q96QK1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.89■□□□□ 0.62
VPS35Q96QK1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 CA15P1-201ENST00000481698 905 ntBASIC18.89■□□□□ 0.61
VPS35Q96QK1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS35Q96QK1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS35Q96QK1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS35Q96QK1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS35Q96QK1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS35Q96QK1 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS35Q96QK1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS35Q96QK1 FEM1AP3-201ENST00000403722 1741 ntBASIC18.87■□□□□ 0.61
VPS35Q96QK1 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS35Q96QK1 AC087499.1-201ENST00000418141 1075 ntBASIC18.87■□□□□ 0.61
VPS35Q96QK1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS35Q96QK1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS35Q96QK1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS35Q96QK1 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS35Q96QK1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS35Q96QK1 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS35Q96QK1 C2orf69P3-201ENST00000565542 1120 ntBASIC18.87■□□□□ 0.61
VPS35Q96QK1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
VPS35Q96QK1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS35Q96QK1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 FP475955.4-201ENST00000623131 1990 ntBASIC18.86■□□□□ 0.61
VPS35Q96QK1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 KRT8P9-201ENST00000558927 1449 ntBASIC18.86■□□□□ 0.61
VPS35Q96QK1 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS35Q96QK1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
VPS35Q96QK1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms