Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.54■□□□□ 0.56
LMX1AQ8TE12 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 AC093458.2-201ENST00000623150 629 ntBASIC18.54■□□□□ 0.56
LMX1AQ8TE12 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 AC005332.1-201ENST00000577698 1310 ntBASIC18.53■□□□□ 0.56
LMX1AQ8TE12 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 STARP1-201ENST00000397973 869 ntBASIC18.53■□□□□ 0.56
LMX1AQ8TE12 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 VENTXP5-201ENST00000523979 775 ntBASIC18.53■□□□□ 0.56
LMX1AQ8TE12 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 GPAT2P1-201ENST00000444924 1672 ntBASIC18.53■□□□□ 0.56
LMX1AQ8TE12 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.53■□□□□ 0.56
LMX1AQ8TE12 LINC01521-201ENST00000504184 1943 ntBASIC18.53■□□□□ 0.56
LMX1AQ8TE12 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.52■□□□□ 0.56
LMX1AQ8TE12 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.52■□□□□ 0.56
LMX1AQ8TE12 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1AQ8TE12 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.52■□□□□ 0.55
LMX1AQ8TE12 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.52■□□□□ 0.55
LMX1AQ8TE12 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.52■□□□□ 0.55
LMX1AQ8TE12 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.52■□□□□ 0.55
LMX1AQ8TE12 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.52■□□□□ 0.55
LMX1AQ8TE12 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.52■□□□□ 0.55
LMX1AQ8TE12 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 LINC01311-201ENST00000565162 1445 ntBASIC18.51■□□□□ 0.55
LMX1AQ8TE12 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 PCDHAC2-203ENST00000615316 3011 ntBASIC18.51■□□□□ 0.55
LMX1AQ8TE12 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 SPDYE15P-201ENST00000424157 909 ntBASIC18.51■□□□□ 0.55
LMX1AQ8TE12 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.51■□□□□ 0.55
LMX1AQ8TE12 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms