Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AL023973.1-201ENST00000624619 620 ntBASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC60Q8IWA6 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 RNF152P1-201ENST00000397754 604 ntBASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 AC009947.2-201ENST00000444014 672 ntBASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 CR769767.2-201ENST00000622735 460 ntBASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC60Q8IWA6 IRX1P1-201ENST00000438849 1838 ntBASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 KRT8P3-201ENST00000519669 1449 ntBASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 AL441883.1-201ENST00000566170 1045 ntBASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 AC141586.3-201ENST00000562166 1838 ntBASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC60Q8IWA6 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CCDC60Q8IWA6 AL032819.2-201ENST00000624543 2162 ntBASIC21.14■□□□□ 0.98
CCDC60Q8IWA6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC60Q8IWA6 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC60Q8IWA6 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 AL023284.2-201ENST00000405850 579 ntBASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 TSPY5P-201ENST00000426936 936 ntBASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CCDC60Q8IWA6 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms