Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AL391807.1-203ENST00000604392 2365 ntBASIC13.25□□□□□ -0.29
CSMD3Q7Z407 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 ABR-217ENST00000572441 563 ntTSL 4 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
CSMD3Q7Z407 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 AC099343.3-201ENST00000605834 2503 ntBASIC13.24□□□□□ -0.29
CSMD3Q7Z407 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 AL353801.3-201ENST00000609898 542 ntBASIC13.24□□□□□ -0.29
CSMD3Q7Z407 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CSMD3Q7Z407 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 PGAM5P1-201ENST00000518923 814 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AC092865.5-201ENST00000545435 363 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AC073314.1-201ENST00000568729 2216 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AC138894.3-201ENST00000603787 634 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AF238378.1-201ENST00000526806 358 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 KRT8P26-201ENST00000534154 1276 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 AC112907.3-201ENST00000577781 2400 ntBASIC13.23□□□□□ -0.29
CSMD3Q7Z407 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 LINC00265-3P-201ENST00000447588 903 ntBASIC13.22□□□□□ -0.29
CSMD3Q7Z407 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 AL773604.1-201ENST00000617417 272 ntBASIC13.22□□□□□ -0.29
CSMD3Q7Z407 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 AC079776.4-201ENST00000511039 504 ntBASIC13.22□□□□□ -0.29
CSMD3Q7Z407 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 AC055717.3-201ENST00000622967 595 ntBASIC13.22□□□□□ -0.29
CSMD3Q7Z407 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CSMD3Q7Z407 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms