Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
CDX1P47902 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC15.51■□□□□ 0.07
CDX1P47902 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.51■□□□□ 0.07
CDX1P47902 AC233263.1-201ENST00000578059 224 ntBASIC15.51■□□□□ 0.07
CDX1P47902 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.51■□□□□ 0.07
CDX1P47902 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CDX1P47902 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDX1P47902 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDX1P47902 KRT8P17-201ENST00000453110 1448 ntBASIC15.51■□□□□ 0.07
CDX1P47902 AC092720.2-201ENST00000602388 1665 ntBASIC15.51■□□□□ 0.07
CDX1P47902 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
CDX1P47902 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDX1P47902 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC15.5■□□□□ 0.07
CDX1P47902 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CDX1P47902 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CDX1P47902 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDX1P47902 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.5■□□□□ 0.07
CDX1P47902 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC15.5■□□□□ 0.07
CDX1P47902 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.5■□□□□ 0.07
CDX1P47902 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 PRKY-204ENST00000533551 1019 ntBASIC15.5■□□□□ 0.07
CDX1P47902 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.5■□□□□ 0.07
CDX1P47902 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.5■□□□□ 0.07
CDX1P47902 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC15.5■□□□□ 0.07
CDX1P47902 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.5■□□□□ 0.07
CDX1P47902 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 AL121829.2-201ENST00000620908 328 ntBASIC15.5■□□□□ 0.07
CDX1P47902 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.5■□□□□ 0.07
CDX1P47902 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CDX1P47902 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.5■□□□□ 0.07
CDX1P47902 Z82202.1-201ENST00000623446 1880 ntBASIC15.5■□□□□ 0.07
CDX1P47902 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.5■□□□□ 0.07
CDX1P47902 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDX1P47902 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 AC104581.1-202ENST00000635932 2618 ntBASIC15.49■□□□□ 0.07
CDX1P47902 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CDX1P47902 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDX1P47902 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CDX1P47902 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.49■□□□□ 0.07
CDX1P47902 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 AC133681.1-201ENST00000465482 601 ntBASIC15.49■□□□□ 0.07
CDX1P47902 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC15.49■□□□□ 0.07
CDX1P47902 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC15.49■□□□□ 0.07
CDX1P47902 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.49■□□□□ 0.07
CDX1P47902 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.49■□□□□ 0.07
CDX1P47902 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.49■□□□□ 0.07
CDX1P47902 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.49■□□□□ 0.07
CDX1P47902 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.49■□□□□ 0.07
CDX1P47902 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
CDX1P47902 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDX1P47902 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms