Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC23.22■■□□□ 1.31
BRCA1P38398 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC23.22■■□□□ 1.31
BRCA1P38398 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC23.22■■□□□ 1.31
BRCA1P38398 AC010240.3-201ENST00000607688 395 ntBASIC23.22■■□□□ 1.31
BRCA1P38398 HOTTIP_1.1-201ENST00000620415 57 ntBASIC23.22■■□□□ 1.31
BRCA1P38398 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BRCA1P38398 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
BRCA1P38398 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BRCA1P38398 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BRCA1P38398 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
BRCA1P38398 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
BRCA1P38398 PMS2P2-201ENST00000425039 1128 ntBASIC23.22■■□□□ 1.31
BRCA1P38398 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC23.22■■□□□ 1.31
BRCA1P38398 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.22■■□□□ 1.31
BRCA1P38398 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BRCA1P38398 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.22■■□□□ 1.31
BRCA1P38398 AC112497.1-201ENST00000624824 639 ntBASIC23.22■■□□□ 1.31
BRCA1P38398 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC23.21■■□□□ 1.31
BRCA1P38398 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC23.21■■□□□ 1.31
BRCA1P38398 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
BRCA1P38398 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 AC022898.2-201ENST00000616822 1312 ntBASIC23.21■■□□□ 1.31
BRCA1P38398 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
BRCA1P38398 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.21■■□□□ 1.31
BRCA1P38398 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC23.21■■□□□ 1.31
BRCA1P38398 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC23.21■■□□□ 1.31
BRCA1P38398 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC23.21■■□□□ 1.31
BRCA1P38398 BNIP3P18-201ENST00000593976 575 ntBASIC23.21■■□□□ 1.31
BRCA1P38398 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC23.21■■□□□ 1.31
BRCA1P38398 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC23.21■■□□□ 1.31
BRCA1P38398 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC23.21■■□□□ 1.31
BRCA1P38398 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BRCA1P38398 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.31
BRCA1P38398 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.31
BRCA1P38398 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
BRCA1P38398 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
BRCA1P38398 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
BRCA1P38398 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.2■■□□□ 1.3
BRCA1P38398 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC23.2■■□□□ 1.3
BRCA1P38398 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.2■■□□□ 1.3
BRCA1P38398 AC010327.4-202ENST00000591484 748 ntBASIC23.2■■□□□ 1.3
BRCA1P38398 TERC-201ENST00000602385 541 ntBASIC23.2■■□□□ 1.3
BRCA1P38398 AC064862.7-201ENST00000604520 867 ntBASIC23.2■■□□□ 1.3
BRCA1P38398 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
BRCA1P38398 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC23.2■■□□□ 1.3
BRCA1P38398 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
BRCA1P38398 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.2■■□□□ 1.3
BRCA1P38398 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BRCA1P38398 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.2■■□□□ 1.3
BRCA1P38398 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
BRCA1P38398 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BRCA1P38398 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
BRCA1P38398 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC23.19■■□□□ 1.3
BRCA1P38398 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.19■■□□□ 1.3
BRCA1P38398 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC23.19■■□□□ 1.3
BRCA1P38398 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 AL691432.2-201ENST00000607222 2038 ntBASIC23.19■■□□□ 1.3
BRCA1P38398 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
BRCA1P38398 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.19■■□□□ 1.3
BRCA1P38398 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
BRCA1P38398 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.19■■□□□ 1.3
BRCA1P38398 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC23.19■■□□□ 1.3
BRCA1P38398 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 AC104390.1-201ENST00000555663 520 ntBASIC23.19■■□□□ 1.3
BRCA1P38398 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC23.19■■□□□ 1.3
BRCA1P38398 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.19■■□□□ 1.3
BRCA1P38398 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC23.19■■□□□ 1.3
BRCA1P38398 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC23.19■■□□□ 1.3
BRCA1P38398 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 AC009237.14-201ENST00000609975 1594 ntBASIC23.19■■□□□ 1.3
BRCA1P38398 ZNF815P-204ENST00000434898 1737 ntBASIC23.19■■□□□ 1.3
BRCA1P38398 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
BRCA1P38398 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 AC139887.3-201ENST00000568585 713 ntBASIC23.18■■□□□ 1.3
BRCA1P38398 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC23.18■■□□□ 1.3
BRCA1P38398 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
BRCA1P38398 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
BRCA1P38398 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
BRCA1P38398 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
BRCA1P38398 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
BRCA1P38398 VENTXP7-201ENST00000475503 772 ntBASIC23.17■■□□□ 1.3
BRCA1P38398 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
BRCA1P38398 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.17■■□□□ 1.3
BRCA1P38398 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms