Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 AL031008.1-201ENST00000619963 541 ntBASIC18.28■□□□□ 0.52
COL5A1P20908 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL5A1P20908 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A1P20908 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.28■□□□□ 0.52
COL5A1P20908 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.28■□□□□ 0.52
COL5A1P20908 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A1P20908 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A1P20908 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.28■□□□□ 0.52
COL5A1P20908 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A1P20908 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.28■□□□□ 0.52
COL5A1P20908 AL732292.2-201ENST00000609649 430 ntBASIC18.28■□□□□ 0.52
COL5A1P20908 AC023511.2-201ENST00000618803 211 ntBASIC18.28■□□□□ 0.52
COL5A1P20908 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
COL5A1P20908 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A1P20908 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.27■□□□□ 0.52
COL5A1P20908 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.27■□□□□ 0.52
COL5A1P20908 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.27■□□□□ 0.52
COL5A1P20908 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
COL5A1P20908 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 UNC93B7-201ENST00000509439 705 ntBASIC18.27■□□□□ 0.52
COL5A1P20908 AP002414.4-201ENST00000589764 1148 ntBASIC18.27■□□□□ 0.52
COL5A1P20908 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.27■□□□□ 0.52
COL5A1P20908 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A1P20908 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
COL5A1P20908 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A1P20908 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A1P20908 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A1P20908 AC011498.5-201ENST00000592027 486 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 AL136038.4-201ENST00000603606 1261 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 AC024243.1-201ENST00000609234 778 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 AC079602.3-201ENST00000623931 403 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 AL157888.1-201ENST00000631930 593 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A1P20908 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A1P20908 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL5A1P20908 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A1P20908 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 KRT18P1-202ENST00000452408 1331 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A1P20908 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A1P20908 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A1P20908 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A1P20908 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.26■□□□□ 0.51
COL5A1P20908 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A1P20908 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.26■□□□□ 0.51
COL5A1P20908 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.26■□□□□ 0.51
COL5A1P20908 MIR3917-201ENST00000580971 93 ntBASIC18.26■□□□□ 0.51
COL5A1P20908 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.26■□□□□ 0.51
COL5A1P20908 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms