Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 MCCD1P1-208ENST00000445732 328 ntBASIC21.67■■□□□ 1.06
COL11A1P12107 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.67■■□□□ 1.06
COL11A1P12107 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.67■■□□□ 1.06
COL11A1P12107 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.67■■□□□ 1.06
COL11A1P12107 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.67■■□□□ 1.06
COL11A1P12107 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.67■■□□□ 1.06
COL11A1P12107 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.66■■□□□ 1.06
COL11A1P12107 AL023284.2-201ENST00000405850 579 ntBASIC21.66■■□□□ 1.06
COL11A1P12107 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.66■■□□□ 1.06
COL11A1P12107 AL450487.1-201ENST00000426799 995 ntBASIC21.66■■□□□ 1.06
COL11A1P12107 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL11A1P12107 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 KRT8P3-201ENST00000519669 1449 ntBASIC21.66■■□□□ 1.06
COL11A1P12107 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
COL11A1P12107 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
COL11A1P12107 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.66■■□□□ 1.06
COL11A1P12107 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.66■■□□□ 1.06
COL11A1P12107 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL11A1P12107 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.65■■□□□ 1.06
COL11A1P12107 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.65■■□□□ 1.06
COL11A1P12107 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.65■■□□□ 1.06
COL11A1P12107 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.65■■□□□ 1.06
COL11A1P12107 AC024243.1-201ENST00000609234 778 ntBASIC21.65■■□□□ 1.06
COL11A1P12107 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.65■■□□□ 1.06
COL11A1P12107 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.65■■□□□ 1.06
COL11A1P12107 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL11A1P12107 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL11A1P12107 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL11A1P12107 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL11A1P12107 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.64■■□□□ 1.06
COL11A1P12107 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.64■■□□□ 1.06
COL11A1P12107 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.64■■□□□ 1.06
COL11A1P12107 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL11A1P12107 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL11A1P12107 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.64■■□□□ 1.06
COL11A1P12107 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL11A1P12107 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL11A1P12107 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL11A1P12107 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL11A1P12107 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
COL11A1P12107 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
COL11A1P12107 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL11A1P12107 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.64■■□□□ 1.05
COL11A1P12107 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.64■■□□□ 1.05
COL11A1P12107 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL11A1P12107 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL11A1P12107 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.63■■□□□ 1.05
COL11A1P12107 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.63■■□□□ 1.05
COL11A1P12107 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.63■■□□□ 1.05
COL11A1P12107 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.63■■□□□ 1.05
COL11A1P12107 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.63■■□□□ 1.05
COL11A1P12107 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.63■■□□□ 1.05
COL11A1P12107 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.63■■□□□ 1.05
COL11A1P12107 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL11A1P12107 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
COL11A1P12107 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
COL11A1P12107 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.62■■□□□ 1.05
COL11A1P12107 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL11A1P12107 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.62■■□□□ 1.05
COL11A1P12107 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL11A1P12107 AC079602.3-201ENST00000623931 403 ntBASIC21.62■■□□□ 1.05
COL11A1P12107 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.62■■□□□ 1.05
COL11A1P12107 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL11A1P12107 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms