Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC073130.3-201ENST00000624389 2278 ntBASIC23.97■■□□□ 1.43
NPHP1O15259 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.97■■□□□ 1.43
NPHP1O15259 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
NPHP1O15259 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.96■■□□□ 1.43
NPHP1O15259 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC23.96■■□□□ 1.43
NPHP1O15259 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC23.96■■□□□ 1.43
NPHP1O15259 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC23.96■■□□□ 1.43
NPHP1O15259 AC092119.3-201ENST00000612618 583 ntBASIC23.96■■□□□ 1.43
NPHP1O15259 IRF5-214ENST00000613821 595 ntTSL 5 BASIC23.96■■□□□ 1.43
NPHP1O15259 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC23.96■■□□□ 1.43
NPHP1O15259 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NPHP1O15259 AL391422.3-201ENST00000603791 2761 ntBASIC23.96■■□□□ 1.43
NPHP1O15259 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
NPHP1O15259 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.95■■□□□ 1.42
NPHP1O15259 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
NPHP1O15259 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
NPHP1O15259 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NPHP1O15259 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC23.95■■□□□ 1.42
NPHP1O15259 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC23.95■■□□□ 1.42
NPHP1O15259 ATP5G2P1-201ENST00000433580 426 ntBASIC23.95■■□□□ 1.42
NPHP1O15259 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.95■■□□□ 1.42
NPHP1O15259 AC034232.1-201ENST00000506026 1064 ntBASIC23.95■■□□□ 1.42
NPHP1O15259 PRELID1P1-202ENST00000567272 903 ntBASIC23.95■■□□□ 1.42
NPHP1O15259 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.95■■□□□ 1.42
NPHP1O15259 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC23.95■■□□□ 1.42
NPHP1O15259 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC23.95■■□□□ 1.42
NPHP1O15259 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
NPHP1O15259 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC23.95■■□□□ 1.42
NPHP1O15259 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
NPHP1O15259 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP1O15259 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC23.95■■□□□ 1.42
NPHP1O15259 AC009237.14-201ENST00000609975 1594 ntBASIC23.95■■□□□ 1.42
NPHP1O15259 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP1O15259 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
NPHP1O15259 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.94■■□□□ 1.42
NPHP1O15259 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
NPHP1O15259 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.94■■□□□ 1.42
NPHP1O15259 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.94■■□□□ 1.42
NPHP1O15259 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NPHP1O15259 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.94■■□□□ 1.42
NPHP1O15259 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.94■■□□□ 1.42
NPHP1O15259 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC23.93■■□□□ 1.42
NPHP1O15259 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 TBC1D3P2-202ENST00000577902 1649 ntBASIC23.93■■□□□ 1.42
NPHP1O15259 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 AL645929.1-201ENST00000420084 975 ntBASIC23.93■■□□□ 1.42
NPHP1O15259 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC23.93■■□□□ 1.42
NPHP1O15259 MIR4674-201ENST00000582457 87 ntBASIC23.93■■□□□ 1.42
NPHP1O15259 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 CR769767.2-201ENST00000622735 460 ntBASIC23.93■■□□□ 1.42
NPHP1O15259 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NPHP1O15259 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC23.93■■□□□ 1.42
NPHP1O15259 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
NPHP1O15259 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC23.92■■□□□ 1.42
NPHP1O15259 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.92■■□□□ 1.42
NPHP1O15259 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 MIR3652-201ENST00000579335 131 ntBASIC23.92■■□□□ 1.42
NPHP1O15259 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.92■■□□□ 1.42
NPHP1O15259 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.92■■□□□ 1.42
NPHP1O15259 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.92■■□□□ 1.42
NPHP1O15259 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms