Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CBX4O00257 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.47■□□□□ 0.71
CBX4O00257 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 AC116562.4-201ENST00000641316 2276 ntBASIC19.46■□□□□ 0.71
CBX4O00257 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CBX4O00257 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 AC005521.1-201ENST00000393351 872 ntBASIC19.46■□□□□ 0.71
CBX4O00257 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.46■□□□□ 0.71
CBX4O00257 KRT18P57-201ENST00000443599 1254 ntBASIC19.46■□□□□ 0.71
CBX4O00257 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.46■□□□□ 0.71
CBX4O00257 AL049597.2-201ENST00000565575 961 ntBASIC19.46■□□□□ 0.71
CBX4O00257 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.46■□□□□ 0.71
CBX4O00257 AC145285.6-201ENST00000604632 637 ntBASIC19.46■□□□□ 0.71
CBX4O00257 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CBX4O00257 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.46■□□□□ 0.71
CBX4O00257 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CBX4O00257 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
CBX4O00257 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CBX4O00257 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CBX4O00257 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.45■□□□□ 0.7
CBX4O00257 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CBX4O00257 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.45■□□□□ 0.7
CBX4O00257 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
CBX4O00257 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.45■□□□□ 0.7
CBX4O00257 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.45■□□□□ 0.7
CBX4O00257 EGLN1P1-201ENST00000531623 762 ntBASIC19.45■□□□□ 0.7
CBX4O00257 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.45■□□□□ 0.7
CBX4O00257 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 KRT18P22-201ENST00000402024 1347 ntBASIC19.45■□□□□ 0.7
CBX4O00257 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CBX4O00257 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CBX4O00257 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.45■□□□□ 0.7
CBX4O00257 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CBX4O00257 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.44■□□□□ 0.7
CBX4O00257 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.44■□□□□ 0.7
CBX4O00257 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.44■□□□□ 0.7
CBX4O00257 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.44■□□□□ 0.7
CBX4O00257 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CBX4O00257 TSPY14P-201ENST00000303979 915 ntBASIC19.44■□□□□ 0.7
CBX4O00257 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.44■□□□□ 0.7
CBX4O00257 AC005363.2-201ENST00000618631 242 ntBASIC19.44■□□□□ 0.7
CBX4O00257 AC092865.7-201ENST00000641832 219 ntBASIC19.44■□□□□ 0.7
CBX4O00257 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CBX4O00257 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.44■□□□□ 0.7
CBX4O00257 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.44■□□□□ 0.7
CBX4O00257 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.44■□□□□ 0.7
CBX4O00257 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.44■□□□□ 0.7
CBX4O00257 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CBX4O00257 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CBX4O00257 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CBX4O00257 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.43■□□□□ 0.7
CBX4O00257 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
CBX4O00257 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 SLC25A1P2-201ENST00000430693 912 ntBASIC19.43■□□□□ 0.7
CBX4O00257 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CBX4O00257 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.43■□□□□ 0.7
CBX4O00257 CCR12P-201ENST00000446203 998 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms