Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
LIMD1Q9UGP4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 SNORD56.1-201ENST00000362913 68 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 RNU6-778P-201ENST00000363269 103 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 Y_RNA.383-201ENST00000383855 97 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 RNU1-73P-201ENST00000383971 164 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 Y_RNA.418-201ENST00000384029 102 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 MIR325-201ENST00000385260 98 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 HLFP1-201ENST00000402375 499 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 RNU6-651P-201ENST00000411040 105 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 RPS20P14-201ENST00000412545 360 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 AL391261.3-201ENST00000557194 520 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 AC108706.1-201ENST00000611053 297 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 SNORA43.4-201ENST00000629559 138 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 AC004817.4-201ENST00000602396 3625 ntBASIC5.28□□□□□ -1.56
LIMD1Q9UGP4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 Y_RNA.446-201ENST00000384178 104 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 MIR298-201ENST00000401212 88 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 RN7SKP61-201ENST00000410642 295 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 RNU6-394P-201ENST00000410735 107 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 TBCAP2-201ENST00000416175 326 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AC074117.2-201ENST00000417130 397 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 RPL21P66-201ENST00000426566 466 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 HMGN2P21-201ENST00000447764 270 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AC125238.1-201ENST00000448842 249 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AC091153.1-201ENST00000466297 402 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 HSPE1P4-201ENST00000550617 308 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 AL078605.1-201ENST00000603529 500 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 uc_338.7-201ENST00000621834 124 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 Z95331.1-201ENST00000623075 23112 ntBASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.27□□□□□ -1.57
LIMD1Q9UGP4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC092268.1-201ENST00000342691 405 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 RNU1-140P-201ENST00000365040 165 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 RNU6-81P-201ENST00000365608 104 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 SNORA40.19-201ENST00000390846 128 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 Y_RNA.595-201ENST00000410403 105 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC078809.1-201ENST00000427601 140 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 SETP5-201ENST00000437270 562 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC007969.2-201ENST00000441891 191 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC091912.1-201ENST00000511351 248 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC006427.1-201ENST00000514359 712 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AL110118.1-201ENST00000553543 400 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC021231.3-201ENST00000558497 370 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 UBL5P4-201ENST00000562584 236 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 MIR1254-2-201ENST00000579553 63 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC020895.1-201ENST00000595362 272 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 AL023881.1-201ENST00000621088 301 ntBASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIMD1Q9UGP4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AL109809.4-201ENST00000603520 2185 ntBASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIMD1Q9UGP4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms