Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC126118.1-201ENST00000607744 628 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC109347.2-201ENST00000610220 349 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AL591516.1-201ENST00000611326 274 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC005858.4-201ENST00000623191 700 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC025034.2-201ENST00000623264 286 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC006386.2-201ENST00000624491 75 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC012005.1-201ENST00000624575 75 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC084035.1-201ENST00000634543 607 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 MIR622-201ENST00000638396 96 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SKA1Q96BD8 AC000403.1-201ENST00000613696 3585 ntBASIC3.19□□□□□ -1.9
SKA1Q96BD8 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SKA1Q96BD8 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SKA1Q96BD8 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA1Q96BD8 RNU6-61P-201ENST00000365528 109 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 Z98749.2-208ENST00000381646 500 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 RNA5SP111-201ENST00000411386 101 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SKA1Q96BD8 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.18□□□□□ -1.9
SKA1Q96BD8 AL139281.1-201ENST00000422120 335 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA1Q96BD8 CALM2P2-201ENST00000428512 440 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC022018.1-201ENST00000430685 241 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 RPL31P35-201ENST00000431058 377 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC004924.1-201ENST00000480160 781 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC097462.2-201ENST00000504623 481 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC116655.1-201ENST00000508324 901 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 RN7SKP272-201ENST00000516988 232 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA1Q96BD8 BTF3P12-201ENST00000519620 469 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.18□□□□□ -1.9
SKA1Q96BD8 AP003072.2-201ENST00000527756 676 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 EIF4BP1-201ENST00000554881 351 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.18□□□□□ -1.9
SKA1Q96BD8 MIR548AC-201ENST00000585049 88 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC040904.1-201ENST00000590850 223 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AP000787.2-201ENST00000604432 568 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AL121992.2-201ENST00000606262 256 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 MIR7106-201ENST00000612419 65 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 AC072046.2-201ENST00000618366 268 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 U6.42-201ENST00000618440 107 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 Z69908.1-201ENST00000622603 247 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 MIR7157-201ENST00000635801 60 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA1Q96BD8 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SKA1Q96BD8 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.18□□□□□ -1.9
SKA1Q96BD8 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MIR412-201ENST00000362142 91 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 RNU6-1097P-201ENST00000363586 107 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 RNU6-898P-201ENST00000365627 104 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 RNU6-166P-201ENST00000384371 107 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 RNU6-748P-201ENST00000384648 107 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 SNORD15B-201ENST00000384714 146 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 RN7SKP58-201ENST00000411010 305 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 RPL35AP12-201ENST00000425362 338 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MYL8P-204ENST00000431574 518 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC236972.1-201ENST00000433225 199 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 MTATP6P16-201ENST00000434543 526 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 RPS12P18-201ENST00000442381 270 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC244505.5-201ENST00000443639 207 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 MTND2P4-201ENST00000445034 1004 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 SNORA31.6-201ENST00000516241 130 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 AL356280.1-201ENST00000603614 379 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 AC087752.4-201ENST00000605911 462 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.17□□□□□ -1.9
SKA1Q96BD8 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 MTND5P17-201ENST00000418405 1603 ntBASIC3.17□□□□□ -1.9
SKA1Q96BD8 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SKA1Q96BD8 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SKA1Q96BD8 SNORA71.1-201ENST00000364523 117 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 KATNBL1P3-201ENST00000443475 909 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 EIF4EP3-201ENST00000498782 656 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 Y_RNA.688-201ENST00000516565 95 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA1Q96BD8 MTCYBP20-201ENST00000524239 1129 ntBASIC3.16□□□□□ -1.9
SKA1Q96BD8 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms