Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.12□□□□□ -1.91
CLIP4Q8N3C7 AC116096.1-201ENST00000566804 2314 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RNU4-35P-201ENST00000362588 141 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.167-201ENST00000363735 109 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 XGY1-201ENST00000381172 446 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.414-201ENST00000384011 101 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RNU6-190P-201ENST00000384154 102 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.460-201ENST00000384255 102 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RNU6-1127P-201ENST00000384580 107 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 CISD1P1-201ENST00000393907 327 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RN7SKP140-201ENST00000411196 284 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 POLHP1-201ENST00000411806 470 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 USP9YP20-201ENST00000419224 558 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RPS15AP27-201ENST00000449183 343 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RBMY2UP-201ENST00000453474 324 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC233279.1-201ENST00000455300 423 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 HSPE1P6-201ENST00000479457 291 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 RPL21P93-201ENST00000480465 489 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 HMGN1P13-201ENST00000505795 138 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 HMGB3P15-201ENST00000507326 574 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.701-201ENST00000516812 110 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 IGKV2-26-201ENST00000518305 343 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AP000763.2-201ENST00000540641 163 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL355836.1-201ENST00000555951 870 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 BNIP3P25-201ENST00000596023 559 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC092747.3-201ENST00000603769 301 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL050343.2-201ENST00000607338 280 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 DUSP12P1-201ENST00000612874 516 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AC039056.2-201ENST00000622261 511 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL034408.1-202ENST00000636088 415 ntBASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.11□□□□□ -1.91
CLIP4Q8N3C7 AL356274.2-201ENST00000624379 3752 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC017071.1-201ENST00000564407 2204 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RNU5A-1-201ENST00000362698 116 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.301-201ENST00000364990 103 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RNU6-1013P-201ENST00000384180 107 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 SNORD70.1-201ENST00000391007 85 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AL139039.1-201ENST00000401900 692 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RNU6ATAC-201ENST00000408749 126 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 HMGB1P27-201ENST00000431429 603 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 HSPD1P21-201ENST00000436541 245 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RPL21P23-201ENST00000446654 460 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC104058.1-201ENST00000448028 297 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 HMGN2P16-201ENST00000456802 261 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RNU6-953P-201ENST00000459154 107 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 TRBV1-201ENST00000476502 284 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 SNORA31.3-201ENST00000516029 96 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.691-201ENST00000516611 103 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 RNU1-45P-201ENST00000517191 141 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AP001804.3-201ENST00000525146 880 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 OR11H5P-201ENST00000554039 926 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 ANP32BP3-201ENST00000559213 706 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 MIR3922-201ENST00000585192 84 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC006557.5-201ENST00000603126 811 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 SNORA51-201ENST00000606420 132 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AL022345.1-201ENST00000607292 135 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC009570.1-201ENST00000609599 745 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC006023.2-201ENST00000609916 167 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 uc_338.15-201ENST00000615470 191 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 CR392039.5-201ENST00000623201 510 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AC048347.1-201ENST00000624621 427 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 MTND5P42-201ENST00000637720 498 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 AF127577.6-201ENST00000623352 2191 ntBASIC3.1□□□□□ -1.91
CLIP4Q8N3C7 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RNU6-1252P-201ENST00000363054 104 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 RNU1-64P-201ENST00000365443 163 ntBASIC3.09□□□□□ -1.91
CLIP4Q8N3C7 Y_RNA.419-201ENST00000384041 102 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms