Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNA5SP471-201ENST00000516971 106 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 RNU6-1212P-201ENST00000517023 104 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AL590705.4-201ENST00000532209 134 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AC006064.5-201ENST00000541782 248 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.57□□□□□ -1.68
SOX4Q06945 SYF2P1-201ENST00000550658 413 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 HNRNPCP4-201ENST00000571636 900 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AC010620.2-201ENST00000600135 313 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 SNX18P1Y-201ENST00000616231 511 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 U6.92-201ENST00000636464 89 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 AL133243.3-201ENST00000617415 3004 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 MAPK10-303ENST00000641324 3959 ntBASIC4.57□□□□□ -1.68
SOX4Q06945 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SOX4Q06945 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.57□□□□□ -1.68
SOX4Q06945 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX4Q06945 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX4Q06945 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
SOX4Q06945 Y_RNA.143-201ENST00000363520 106 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 RNU6-384P-201ENST00000364900 104 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 MIR190B-201ENST00000401119 79 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 AL513331.1-201ENST00000411908 397 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 RPL23AP22-201ENST00000437556 453 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 RPL7AP28-201ENST00000464513 571 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.56□□□□□ -1.68
SOX4Q06945 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX4Q06945 SCARNA24.2-201ENST00000516968 130 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 AF186190.1-201ENST00000517470 480 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX4Q06945 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX4Q06945 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX4Q06945 AL713866.2-201ENST00000603579 219 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 AC009318.2-201ENST00000610917 651 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX4Q06945 AC132825.6-201ENST00000638861 357 ntBASIC4.56□□□□□ -1.68
SOX4Q06945 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX4Q06945 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX4Q06945 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX4Q06945 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.55□□□□□ -1.68
SOX4Q06945 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 RNA5SP130-201ENST00000364431 114 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 Y_RNA.291-201ENST00000364886 113 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 Y_RNA.358-201ENST00000365491 99 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 RNU6-125P-201ENST00000384505 107 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 RNU6-837P-201ENST00000391056 108 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 RPL21P75-201ENST00000396599 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 RPL21P28-201ENST00000401418 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 MTCYBP2-201ENST00000407745 171 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AL590556.1-201ENST00000423231 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 MTATP6P4-201ENST00000427725 675 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 MTCO3P29-201ENST00000432119 779 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.55□□□□□ -1.68
SOX4Q06945 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 RN7SKP210-201ENST00000459176 261 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 RPL21P11-201ENST00000461458 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 RPL21P39-201ENST00000463605 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AC132942.1-201ENST00000486753 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.55□□□□□ -1.68
SOX4Q06945 AC093591.1-201ENST00000491435 481 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 RPL21P16-201ENST00000495531 483 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 RNA5SP360-201ENST00000516555 118 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.55□□□□□ -1.68
SOX4Q06945 CBX3P4-201ENST00000538909 354 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AC004024.1-201ENST00000549244 247 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 MIR4643-201ENST00000577473 78 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AC107294.1-201ENST00000609524 467 ntBASIC4.55□□□□□ -1.68
SOX4Q06945 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.55□□□□□ -1.68
SOX4Q06945 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
SOX4Q06945 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SOX4Q06945 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SOX4Q06945 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SOX4Q06945 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.55□□□□□ -1.68
SOX4Q06945 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX4Q06945 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.54□□□□□ -1.68
SOX4Q06945 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SOX4Q06945 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 NCAPGP1-201ENST00000505112 1814 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX4Q06945 SPRR2C-201ENST00000290702 219 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 RNU6-1159P-201ENST00000362933 107 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 Y_RNA.199-201ENST00000364014 102 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 RNA5SP22-201ENST00000365393 109 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 Y_RNA.506-201ENST00000384494 102 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 Y_RNA.541-201ENST00000384640 113 ntBASIC4.54□□□□□ -1.68
SOX4Q06945 AL592148.1-201ENST00000413568 445 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms