Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC087752.4-201ENST00000605911 462 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC087241.4-201ENST00000612441 480 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC092140.2-201ENST00000618027 521 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL603839.4-201ENST00000624658 1005 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 U2.21-201ENST00000637295 81 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC099654.13-201ENST00000639774 207 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC026241.1-201ENST00000517873 2142 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
TNFRSF4P43489 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
TNFRSF4P43489 TEX21P-201ENST00000447107 1476 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 RNU6-288P-201ENST00000363690 104 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 RNY4P34-201ENST00000364779 95 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 RNU1-100P-201ENST00000365255 165 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 RNU5E-6P-201ENST00000365574 115 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 RNU6-14P-201ENST00000384630 106 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
TNFRSF4P43489 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 RPS3AP3-201ENST00000411933 242 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC023141.4-201ENST00000412031 328 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 SKA2P1-201ENST00000425592 390 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 AL121890.1-201ENST00000435457 205 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC098831.1-201ENST00000440661 216 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 AL513124.1-201ENST00000450410 614 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 RPL39P36-201ENST00000490784 156 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 NDUFB4P2-201ENST00000509515 391 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 MTCYBP33-201ENST00000575007 1130 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.59□□□□□ -1.99
TNFRSF4P43489 BNIP3P9-201ENST00000603714 553 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC131902.3-201ENST00000611767 581 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 AC110994.2-201ENST00000635481 492 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 MIR3199-2-201ENST00000636243 86 ntBASIC2.59□□□□□ -1.99
TNFRSF4P43489 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.59□□□□□ -2
TNFRSF4P43489 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
TNFRSF4P43489 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
TNFRSF4P43489 Y_RNA.359-201ENST00000365498 102 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 SMIM11P1-201ENST00000369586 178 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 Y_RNA.436-201ENST00000384097 102 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC096649.2-201ENST00000416186 393 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.58□□□□□ -2
TNFRSF4P43489 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.58□□□□□ -2
TNFRSF4P43489 HMGB3P12-201ENST00000438745 556 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.58□□□□□ -2
TNFRSF4P43489 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.58□□□□□ -2
TNFRSF4P43489 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.58□□□□□ -2
TNFRSF4P43489 AC126182.1-201ENST00000478134 357 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC010587.1-201ENST00000505809 469 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC008549.1-201ENST00000512900 643 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC022447.1-201ENST00000515358 464 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 RNU7-51P-201ENST00000516560 62 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 RNU6-677P-201ENST00000516914 101 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 RNA5SP337-201ENST00000517007 109 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AP003467.2-201ENST00000520175 319 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AP003122.4-201ENST00000530980 758 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.58□□□□□ -2
TNFRSF4P43489 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.58□□□□□ -2
TNFRSF4P43489 GLYCAM1-201ENST00000546596 285 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.58□□□□□ -2
TNFRSF4P43489 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.58□□□□□ -2
TNFRSF4P43489 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.58□□□□□ -2
TNFRSF4P43489 AC064872.1-201ENST00000604823 1072 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AL365204.3-201ENST00000612448 685 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 AC011939.3-201ENST00000613686 466 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.58□□□□□ -2
TNFRSF4P43489 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.58□□□□□ -2
TNFRSF4P43489 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
TNFRSF4P43489 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
TNFRSF4P43489 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.58□□□□□ -2
TNFRSF4P43489 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
TNFRSF4P43489 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.57□□□□□ -2
TNFRSF4P43489 HSPE1P11-201ENST00000339579 310 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 SNORD56.5-201ENST00000364281 72 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 Y_RNA.318-201ENST00000365131 97 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.57□□□□□ -2
TNFRSF4P43489 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.57□□□□□ -2
TNFRSF4P43489 MIR518C-201ENST00000384822 101 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.57□□□□□ -2
TNFRSF4P43489 RNU6-750P-201ENST00000390946 107 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 RPS3AP36-201ENST00000398190 775 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 FO393413.1-201ENST00000402892 195 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 RPS12P24-201ENST00000412619 387 ntBASIC2.57□□□□□ -2
TNFRSF4P43489 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.57□□□□□ -2
TNFRSF4P43489 AL353729.1-201ENST00000425044 720 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms