Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MTCO3P45-201ENST00000443036 613 ntBASIC2□□□□□ -2.09
BRCA1P38398 UBBP3-201ENST00000445497 241 ntBASIC2□□□□□ -2.09
BRCA1P38398 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2□□□□□ -2.09
BRCA1P38398 RPL26P9-201ENST00000457466 433 ntBASIC2□□□□□ -2.09
BRCA1P38398 AC134050.1-201ENST00000495088 933 ntBASIC2□□□□□ -2.09
BRCA1P38398 HMGB1P28-201ENST00000507778 552 ntBASIC2□□□□□ -2.09
BRCA1P38398 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2□□□□□ -2.09
BRCA1P38398 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2□□□□□ -2.09
BRCA1P38398 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2□□□□□ -2.09
BRCA1P38398 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2□□□□□ -2.09
BRCA1P38398 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2□□□□□ -2.09
BRCA1P38398 AC006270.3-201ENST00000605967 1036 ntBASIC2□□□□□ -2.09
BRCA1P38398 AL157834.3-201ENST00000615543 103 ntBASIC2□□□□□ -2.09
BRCA1P38398 AC022709.1-201ENST00000615967 87 ntBASIC2□□□□□ -2.09
BRCA1P38398 AC079597.1-201ENST00000624306 508 ntBASIC2□□□□□ -2.09
BRCA1P38398 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
BRCA1P38398 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2□□□□□ -2.09
BRCA1P38398 AC099786.3-201ENST00000565735 1410 ntBASIC2□□□□□ -2.09
BRCA1P38398 RNA5SP37-201ENST00000365420 130 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
BRCA1P38398 SNORA40.2-201ENST00000390847 128 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 HMGB3P2-201ENST00000411913 584 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 USP9YP33-201ENST00000412220 421 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.99□□□□□ -2.09
BRCA1P38398 AL449283.1-202ENST00000418249 604 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 USP9YP35-201ENST00000435696 412 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 SNRPEP9-201ENST00000436794 238 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC108729.1-201ENST00000487812 947 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 RPL37P25-201ENST00000507308 276 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 RNU6-928P-201ENST00000516876 104 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 RNU6-840P-201ENST00000517275 65 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.99□□□□□ -2.09
BRCA1P38398 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC1.99□□□□□ -2.09
BRCA1P38398 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC015720.1-201ENST00000565251 277 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL121917.1-203ENST00000605534 577 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AP002782.1-201ENST00000623107 614 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC073308.1-201ENST00000623696 305 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC068057.2-201ENST00000624047 895 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL356596.1-201ENST00000624230 379 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.99□□□□□ -2.09
BRCA1P38398 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
BRCA1P38398 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC010329.5-201ENST00000623497 2174 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 SNORD114-26-201ENST00000363543 72 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 RNU6-270P-201ENST00000364131 105 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 SNORD114-22-201ENST00000365423 72 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 RNU6-1072P-201ENST00000384703 107 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 RNU6-443P-201ENST00000384780 107 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC022634.1-201ENST00000520765 532 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.99□□□□□ -2.09
BRCA1P38398 AP001269.3-201ENST00000588718 329 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC004805.2-201ENST00000605382 482 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL121652.1-201ENST00000608851 448 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL133445.2-201ENST00000611191 527 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AC023158.2-201ENST00000614876 543 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL603758.1-201ENST00000618654 241 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 AL121895.2-201ENST00000619558 447 ntBASIC1.99□□□□□ -2.09
BRCA1P38398 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.98□□□□□ -2.09
BRCA1P38398 OR4G1P-203ENST00000641984 1631 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC110491.1-201ENST00000562191 2010 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 RNU6-1328P-201ENST00000410938 106 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC007560.1-201ENST00000426912 237 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC1.98□□□□□ -2.09
BRCA1P38398 AC098831.1-201ENST00000440661 216 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC007395.1-201ENST00000451333 677 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 RNU7-26P-201ENST00000458980 63 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC090255.1-201ENST00000495779 349 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC112198.4-201ENST00000515450 351 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 RNY4P37-201ENST00000516225 96 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.98□□□□□ -2.09
BRCA1P38398 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.98□□□□□ -2.09
BRCA1P38398 AC002545.1-201ENST00000592511 181 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AC112220.3-201ENST00000605502 502 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 AL355472.4-201ENST00000610233 626 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 MTND4P1-201ENST00000457501 1466 ntBASIC1.98□□□□□ -2.09
BRCA1P38398 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
BRCA1P38398 RNU5E-10P-201ENST00000363506 118 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 RNU6-750P-201ENST00000390946 107 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 RPL23AP29-201ENST00000397284 453 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 TPMTP3-201ENST00000411928 735 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.97□□□□□ -2.09
BRCA1P38398 MED14P1-201ENST00000430517 648 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AL049874.1-201ENST00000489560 388 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC034222.1-201ENST00000494052 532 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 ATP5EP1-201ENST00000510257 156 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC116353.3-201ENST00000511215 249 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.97□□□□□ -2.09
BRCA1P38398 MIR4509-3-201ENST00000578671 94 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 MIR4509-2-201ENST00000583920 94 ntBASIC1.97□□□□□ -2.09
BRCA1P38398 VN1R83P-201ENST00000595685 445 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms