Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AL512310.1-201ENST00000548639 172 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.26□□□□□ -1.89
SHMT1P34896 AP001330.5-201ENST00000607176 411 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC126118.1-201ENST00000607744 628 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC093648.1-201ENST00000623546 606 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 AC093831.2-201ENST00000624393 3427 ntBASIC3.26□□□□□ -1.89
SHMT1P34896 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SHMT1P34896 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
SHMT1P34896 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 Y_RNA.9-201ENST00000362354 101 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 RNU6-1322P-201ENST00000364309 107 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 Y_RNA.372-201ENST00000365599 102 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 Y_RNA.409-201ENST00000383990 98 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 SNORA24.1-201ENST00000384401 135 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 RNU6-387P-201ENST00000411331 105 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 AL353193.1-201ENST00000421444 268 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 TMEM167AP1-201ENST00000423409 219 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT1P34896 MTCO3P30-201ENST00000426425 670 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC009969.1-201ENST00000438726 172 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT1P34896 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT1P34896 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT1P34896 SSXP4-201ENST00000451349 245 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AL356010.1-201ENST00000456364 102 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 MRPS17P3-201ENST00000465453 385 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC003982.1-202ENST00000469928 248 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AL160314.1-201ENST00000490836 438 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.25□□□□□ -1.89
SHMT1P34896 ARL4AP2-201ENST00000507378 601 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.25□□□□□ -1.89
SHMT1P34896 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SHMT1P34896 HMGB1P33-201ENST00000563485 527 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT1P34896 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.25□□□□□ -1.89
SHMT1P34896 AC024619.4-201ENST00000580924 316 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC107304.1-201ENST00000604229 296 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT1P34896 AC107294.3-201ENST00000609211 526 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC090115.4-201ENST00000609970 188 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AL390240.1-201ENST00000612950 384 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 AC025034.2-201ENST00000623264 286 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 U6.114-201ENST00000636407 96 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 CUL1P1-201ENST00000509510 2425 ntBASIC3.25□□□□□ -1.89
SHMT1P34896 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.25□□□□□ -1.89
SHMT1P34896 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.25□□□□□ -1.89
SHMT1P34896 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT1P34896 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT1P34896 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.24□□□□□ -1.89
SHMT1P34896 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
SHMT1P34896 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT1P34896 DYNLT3P1-201ENST00000378574 347 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AL356057.3-201ENST00000402607 340 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.24□□□□□ -1.89
SHMT1P34896 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.24□□□□□ -1.89
SHMT1P34896 NDUFB4P5-201ENST00000415445 361 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 MRPL50P2-201ENST00000416821 482 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 USP9YP18-201ENST00000425912 695 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AL513043.1-201ENST00000439124 535 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.24□□□□□ -1.89
SHMT1P34896 MTND4P25-201ENST00000441039 533 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 BNIP3P2-201ENST00000441221 577 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.24□□□□□ -1.89
SHMT1P34896 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT1P34896 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.24□□□□□ -1.89
SHMT1P34896 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.24□□□□□ -1.89
SHMT1P34896 KC877373.1-201ENST00000479066 408 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC108078.2-201ENST00000510750 236 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 TTC39CP1-201ENST00000512513 755 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 RNU4-29P-201ENST00000515943 174 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 Y_RNA.693-201ENST00000516641 110 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC104383.1-201ENST00000530297 370 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 OR5B19P-201ENST00000531766 928 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 HPRT1P3-201ENST00000539521 576 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.24□□□□□ -1.89
SHMT1P34896 AL512360.1-201ENST00000555346 234 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AC009570.1-201ENST00000609599 745 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC006111.3-201ENST00000622137 383 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 MTND1P37-201ENST00000636562 264 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 MTND5P42-201ENST00000637720 498 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SHMT1P34896 AC007785.2-201ENST00000598627 1916 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SHMT1P34896 FAM35CP-201ENST00000554755 2470 ntBASIC3.24□□□□□ -1.89
SHMT1P34896 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SHMT1P34896 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.23□□□□□ -1.89
SHMT1P34896 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SHMT1P34896 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms