Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.9□□□□□ -2.11
USF1P22415 MIR147B-201ENST00000390185 80 ntBASIC1.9□□□□□ -2.11
USF1P22415 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.9□□□□□ -2.11
USF1P22415 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 RPS3AP44-201ENST00000425466 790 ntBASIC1.9□□□□□ -2.11
USF1P22415 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.9□□□□□ -2.11
USF1P22415 Z98742.2-201ENST00000431564 187 ntBASIC1.9□□□□□ -2.11
USF1P22415 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USF1P22415 IPO7P1-201ENST00000442031 636 ntBASIC1.9□□□□□ -2.11
USF1P22415 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USF1P22415 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.9□□□□□ -2.11
USF1P22415 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.9□□□□□ -2.11
USF1P22415 AC139453.3-201ENST00000493276 369 ntBASIC1.9□□□□□ -2.11
USF1P22415 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 RNA5SP112-201ENST00000515937 99 ntBASIC1.9□□□□□ -2.11
USF1P22415 MIR892C-201ENST00000516410 77 ntBASIC1.9□□□□□ -2.11
USF1P22415 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.9□□□□□ -2.11
USF1P22415 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 ROCK1P1-201ENST00000573767 549 ntBASIC1.9□□□□□ -2.11
USF1P22415 NRBF2P1-201ENST00000587407 859 ntBASIC1.9□□□□□ -2.11
USF1P22415 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.9□□□□□ -2.11
USF1P22415 SNORD14A-201ENST00000606526 91 ntBASIC1.9□□□□□ -2.11
USF1P22415 AC091965.4-201ENST00000607691 587 ntBASIC1.9□□□□□ -2.11
USF1P22415 AL355472.4-201ENST00000610233 626 ntBASIC1.9□□□□□ -2.11
USF1P22415 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.9□□□□□ -2.11
USF1P22415 AC090970.3-201ENST00000612566 866 ntBASIC1.9□□□□□ -2.11
USF1P22415 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.9□□□□□ -2.11
USF1P22415 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.9□□□□□ -2.11
USF1P22415 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
USF1P22415 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
USF1P22415 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
USF1P22415 RNY4P24-201ENST00000362735 96 ntBASIC1.89□□□□□ -2.11
USF1P22415 RNA5SP125-201ENST00000364843 120 ntBASIC1.89□□□□□ -2.11
USF1P22415 AL355497.1-201ENST00000406262 551 ntBASIC1.89□□□□□ -2.11
USF1P22415 U3.37-201ENST00000408528 213 ntBASIC1.89□□□□□ -2.11
USF1P22415 SNORA11.4-201ENST00000408823 129 ntBASIC1.89□□□□□ -2.11
USF1P22415 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.89□□□□□ -2.11
USF1P22415 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.89□□□□□ -2.11
USF1P22415 RPS15AP28-201ENST00000435088 386 ntBASIC1.89□□□□□ -2.11
USF1P22415 AL031659.1-201ENST00000447075 539 ntBASIC1.89□□□□□ -2.11
USF1P22415 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.89□□□□□ -2.11
USF1P22415 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.89□□□□□ -2.11
USF1P22415 OR6C5P-201ENST00000452388 923 ntBASIC1.89□□□□□ -2.11
USF1P22415 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.89□□□□□ -2.11
USF1P22415 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.89□□□□□ -2.11
USF1P22415 UBE2V1P12-201ENST00000503954 474 ntBASIC1.89□□□□□ -2.11
USF1P22415 MTATP6P9-201ENST00000515039 680 ntBASIC1.89□□□□□ -2.11
USF1P22415 RNU6-143P-201ENST00000516942 93 ntBASIC1.89□□□□□ -2.11
USF1P22415 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.89□□□□□ -2.11
USF1P22415 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.89□□□□□ -2.11
USF1P22415 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USF1P22415 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 AC073544.2-201ENST00000601155 540 ntBASIC1.89□□□□□ -2.11
USF1P22415 AL450336.1-201ENST00000605180 586 ntBASIC1.89□□□□□ -2.11
USF1P22415 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.89□□□□□ -2.11
USF1P22415 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 AC024581.2-201ENST00000619986 252 ntBASIC1.89□□□□□ -2.11
USF1P22415 MIR6132-201ENST00000622083 109 ntBASIC1.89□□□□□ -2.11
USF1P22415 MIR203B-201ENST00000636080 86 ntBASIC1.89□□□□□ -2.11
USF1P22415 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USF1P22415 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
USF1P22415 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
USF1P22415 AC002543.1-201ENST00000299783 1954 ntBASIC1.89□□□□□ -2.11
USF1P22415 RNU6-931P-201ENST00000363850 107 ntBASIC1.88□□□□□ -2.11
USF1P22415 SNORA3A-201ENST00000364113 130 ntBASIC1.88□□□□□ -2.11
USF1P22415 RNU6-188P-201ENST00000364207 107 ntBASIC1.88□□□□□ -2.11
USF1P22415 RNU6-157P-201ENST00000383957 107 ntBASIC1.88□□□□□ -2.11
USF1P22415 RNU6-701P-201ENST00000384059 107 ntBASIC1.88□□□□□ -2.11
USF1P22415 RNU6-14P-201ENST00000384630 106 ntBASIC1.88□□□□□ -2.11
USF1P22415 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.88□□□□□ -2.11
USF1P22415 RN7SKP32-201ENST00000410167 303 ntBASIC1.88□□□□□ -2.11
USF1P22415 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.88□□□□□ -2.11
USF1P22415 MTCO2P21-201ENST00000419780 677 ntBASIC1.88□□□□□ -2.11
USF1P22415 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.88□□□□□ -2.11
USF1P22415 TIMM9P1-201ENST00000436122 256 ntBASIC1.88□□□□□ -2.11
USF1P22415 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.88□□□□□ -2.11
USF1P22415 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.88□□□□□ -2.11
USF1P22415 NEFMP1-201ENST00000443423 1006 ntBASIC1.88□□□□□ -2.11
USF1P22415 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.88□□□□□ -2.11
USF1P22415 AL441985.1-201ENST00000457727 251 ntBASIC1.88□□□□□ -2.11
USF1P22415 RPL39P36-201ENST00000490784 156 ntBASIC1.88□□□□□ -2.11
USF1P22415 RPL22P13-201ENST00000493291 347 ntBASIC1.88□□□□□ -2.11
USF1P22415 AC104685.1-201ENST00000502445 371 ntBASIC1.88□□□□□ -2.11
USF1P22415 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.88□□□□□ -2.11
USF1P22415 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.88□□□□□ -2.11
USF1P22415 RNU6-1183P-201ENST00000517054 60 ntBASIC1.88□□□□□ -2.11
USF1P22415 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.88□□□□□ -2.11
USF1P22415 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.88□□□□□ -2.11
USF1P22415 DUXAP1-201ENST00000556632 463 ntBASIC1.88□□□□□ -2.11
USF1P22415 AL133241.1-201ENST00000556832 487 ntBASIC1.88□□□□□ -2.11
USF1P22415 KC877982.1-201ENST00000602313 470 ntBASIC1.88□□□□□ -2.11
USF1P22415 BNIP3P9-201ENST00000603714 553 ntBASIC1.88□□□□□ -2.11
USF1P22415 AC005014.3-201ENST00000605985 190 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms