Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 XGY1-201ENST00000381172 446 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RNU6-190P-201ENST00000384154 102 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RNU6-140P-201ENST00000384566 108 ntBASIC2.53□□□□□ -2
LIME1Q9H400 MIR196B-201ENST00000384852 84 ntBASIC2.53□□□□□ -2
LIME1Q9H400 SAR1AP2-201ENST00000392696 594 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RN7SKP58-201ENST00000411010 305 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AC099548.1-201ENST00000421443 426 ntBASIC2.53□□□□□ -2
LIME1Q9H400 HSPE1P1-201ENST00000421494 318 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AL645937.1-202ENST00000421799 937 ntBASIC2.53□□□□□ -2
LIME1Q9H400 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.53□□□□□ -2
LIME1Q9H400 AC063976.3-201ENST00000426849 329 ntBASIC2.53□□□□□ -2
LIME1Q9H400 DPPA2P1-201ENST00000428060 556 ntBASIC2.53□□□□□ -2
LIME1Q9H400 HMGB1P27-201ENST00000431429 603 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AL358934.1-201ENST00000432346 324 ntBASIC2.53□□□□□ -2
LIME1Q9H400 OR2B8P-201ENST00000432841 938 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RPS20P5-201ENST00000434808 360 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AL714022.1-201ENST00000439897 151 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.53□□□□□ -2
LIME1Q9H400 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.53□□□□□ -2
LIME1Q9H400 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 SNORD109B-201ENST00000458961 67 ntBASIC2.53□□□□□ -2
LIME1Q9H400 SNORD109A-201ENST00000459128 67 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RNU6-953P-201ENST00000459154 107 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RPL39P36-201ENST00000490784 156 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.53□□□□□ -2
LIME1Q9H400 HMGB1P29-201ENST00000505659 499 ntBASIC2.53□□□□□ -2
LIME1Q9H400 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
LIME1Q9H400 AC108078.1-201ENST00000508073 725 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AC010265.1-201ENST00000513509 211 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.53□□□□□ -2
LIME1Q9H400 RNU6-677P-201ENST00000516914 101 ntBASIC2.53□□□□□ -2
LIME1Q9H400 RNU6-445P-201ENST00000516949 107 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AP001646.1-201ENST00000527936 915 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.53□□□□□ -2
LIME1Q9H400 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AL359212.1-201ENST00000556608 614 ntBASIC2.53□□□□□ -2
LIME1Q9H400 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.53□□□□□ -2
LIME1Q9H400 MTND1P15-201ENST00000579262 949 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.53□□□□□ -2
LIME1Q9H400 AC012119.1-201ENST00000603184 222 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AC103591.3-201ENST00000608684 209 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AL161734.1-201ENST00000609720 557 ntBASIC2.53□□□□□ -2
LIME1Q9H400 Z99129.1-201ENST00000612510 255 ntBASIC2.53□□□□□ -2
LIME1Q9H400 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.53□□□□□ -2
LIME1Q9H400 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.53□□□□□ -2
LIME1Q9H400 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.53□□□□□ -2
LIME1Q9H400 AC084035.1-201ENST00000634543 607 ntBASIC2.53□□□□□ -2
LIME1Q9H400 U2.21-201ENST00000637295 81 ntBASIC2.53□□□□□ -2
LIME1Q9H400 FAM35BP-202ENST00000497389 3337 ntBASIC2.53□□□□□ -2
LIME1Q9H400 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
LIME1Q9H400 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
LIME1Q9H400 RNU4-75P-201ENST00000364621 146 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 MIR888-201ENST00000401186 77 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 RNA5SP274-201ENST00000410484 108 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 RPS12P24-201ENST00000412619 387 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.52□□□□□ -2.01
LIME1Q9H400 RPL7P46-201ENST00000425129 740 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 RPL23AP30-201ENST00000432419 501 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AL591704.1-201ENST00000432574 275 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 MTATP6P16-201ENST00000434543 526 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 SNRPEP9-201ENST00000436794 238 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC010095.1-201ENST00000443543 144 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC006483.1-201ENST00000487308 313 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.52□□□□□ -2.01
LIME1Q9H400 AC091435.1-201ENST00000505442 584 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.52□□□□□ -2.01
LIME1Q9H400 AC117522.1-201ENST00000509821 380 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC098591.2-201ENST00000510152 315 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 RNA5SP385-201ENST00000515947 110 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
LIME1Q9H400 AL391261.3-201ENST00000557194 520 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC068135.2-201ENST00000569293 1028 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AL022154.1-201ENST00000604698 785 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC093648.1-201ENST00000623546 606 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC073308.1-201ENST00000623696 305 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC068880.5-201ENST00000624331 290 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 AC243829.7-201ENST00000633081 225 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.52□□□□□ -2.01
LIME1Q9H400 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 MAPK10-362ENST00000641864 4484 ntBASIC2.52□□□□□ -2.01
LIME1Q9H400 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.52□□□□□ -2.01
LIME1Q9H400 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIME1Q9H400 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
LIME1Q9H400 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
LIME1Q9H400 MTND5P17-201ENST00000418405 1603 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 Y_RNA.159-201ENST00000363674 87 ntBASIC2.51□□□□□ -2.01
LIME1Q9H400 RNU6-512P-201ENST00000364438 103 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms