Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MAPK10-286ENST00000641208 8747 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR56A5-201ENST00000340110 738 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RN7SKP103-201ENST00000363848 320 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RNU6-142P-201ENST00000384019 107 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 SNORA29-201ENST00000384183 140 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 MIR708-201ENST00000390708 88 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RNU6-130P-201ENST00000411112 103 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR2AM1P-201ENST00000422137 422 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 CKS1BP6-201ENST00000424932 240 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AL772161.1-201ENST00000439130 476 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RPEP5-201ENST00000441137 268 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC112498.1-201ENST00000444401 332 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RN7SL558P-201ENST00000497468 299 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR7H2P-201ENST00000513483 306 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 RNU6-709P-201ENST00000517257 104 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 AC068831.7-201ENST00000616954 363 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 SCARNA4-201ENST00000629045 128 ntBASIC3.76□□□□□ -1.81
CCDC140Q96MF4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC140Q96MF4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AL133383.2-201ENST00000622958 2336 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RNU6-379P-201ENST00000363813 104 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.276-201ENST00000364732 109 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.458-201ENST00000384240 102 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.483-201ENST00000384380 101 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 UBA52P6-201ENST00000399822 382 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AL645733.1-201ENST00000402250 217 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RN7SKP125-201ENST00000410481 302 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 PSMD10P3-201ENST00000437000 448 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AL161651.1-201ENST00000440882 223 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 GPM6BP3-201ENST00000442797 145 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC010099.1-201ENST00000455434 375 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 LINC01399-202ENST00000458450 244 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC087477.1-201ENST00000465747 340 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AF186996.7-201ENST00000492781 209 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RN7SKP122-201ENST00000515923 296 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RNU5F-8P-201ENST00000515941 111 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RNA5SP497-201ENST00000516081 97 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RNU6-1143P-201ENST00000516125 104 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RNU6-388P-201ENST00000517012 105 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RNU6-389P-201ENST00000517048 105 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AP000827.1-201ENST00000527814 258 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AP000867.2-201ENST00000532468 320 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC090617.3-201ENST00000573670 475 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 MIR4700-201ENST00000578311 74 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC233702.9-201ENST00000581528 203 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AC073410.2-201ENST00000603240 332 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 AL731566.1-201ENST00000620490 1937 ntBASIC3.75□□□□□ -1.81
CCDC140Q96MF4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC140Q96MF4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC093591.2-201ENST00000565254 3843 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 AC010615.1-201ENST00000594254 1764 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC140Q96MF4 Y_RNA.105-201ENST00000363182 111 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RNA5SP515-201ENST00000364570 118 ntBASIC3.74□□□□□ -1.81
CCDC140Q96MF4 RNU6-472P-201ENST00000384299 107 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms