Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RPL23AP32-201ENST00000395315 459 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 RNA5SP184-201ENST00000411071 108 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 ISCA1P1-201ENST00000426679 387 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AL592045.1-201ENST00000429867 352 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 RPS15AP5-201ENST00000436276 388 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 HMGB3P12-201ENST00000438745 556 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 USP9YP15-201ENST00000442391 422 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AL022238.1-201ENST00000442557 355 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 MTND6P13-201ENST00000443510 523 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 WASF1P1-201ENST00000447560 1131 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 CACYBPP2-201ENST00000453625 678 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 MTCO2P29-201ENST00000465212 189 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 MRPS17P3-201ENST00000465453 385 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 RAP1BP2-201ENST00000478270 544 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC004924.1-201ENST00000480160 781 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 NDUFB4P2-201ENST00000509515 391 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC107222.1-201ENST00000510899 637 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 RNU2-10P-201ENST00000516375 211 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 RNU1-104P-201ENST00000517280 175 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 SUB1P1-201ENST00000524415 382 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC012414.6-201ENST00000568241 401 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC103810.1-201ENST00000579873 453 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC025811.1-201ENST00000604312 472 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC068276.1-201ENST00000605793 379 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AL137847.3-201ENST00000611521 109 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC008250.2-201ENST00000615261 205 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
SKA3Q8IX90 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC008669.1-201ENST00000565823 2178 ntBASIC2.27□□□□□ -2.05
SKA3Q8IX90 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
SKA3Q8IX90 AC007336.1-201ENST00000576365 3828 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 SNORD56.2-201ENST00000363242 71 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 RNY3P10-201ENST00000384764 102 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 MIR196B-201ENST00000384852 84 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 RPL26P27-201ENST00000414397 437 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 USP9YP27-201ENST00000418455 438 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC092427.1-202ENST00000430569 476 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 MTND4P25-201ENST00000441039 533 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 RNU6-953P-201ENST00000459154 107 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 RPS27AP10-201ENST00000496103 208 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 RNA5SP282-201ENST00000516355 108 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 RNU6-677P-201ENST00000516914 101 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 PRELID2P1-201ENST00000552837 301 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AL590229.1-201ENST00000603497 542 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AL355877.2-201ENST00000603670 358 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 Z94722.1-201ENST00000604328 474 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC091304.9-201ENST00000612091 226 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 MIR6895-201ENST00000613497 78 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 UCA1.1-201ENST00000620952 75 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AC092608.2-201ENST00000624427 218 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 AL603839.4-201ENST00000624658 1005 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 U2.21-201ENST00000637295 81 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
SKA3Q8IX90 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
SKA3Q8IX90 AL359693.1-201ENST00000614959 2407 ntBASIC2.26□□□□□ -2.05
SKA3Q8IX90 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.25□□□□□ -2.05
SKA3Q8IX90 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.25□□□□□ -2.05
SKA3Q8IX90 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.25□□□□□ -2.05
SKA3Q8IX90 AL139276.1-201ENST00000311910 1001 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 SNORA67.1-201ENST00000364749 141 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RNY4P34-201ENST00000364779 95 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RNU1-100P-201ENST00000365255 165 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RNU6-946P-201ENST00000383878 107 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RNU6-39P-201ENST00000384344 107 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 SNORA40.3-201ENST00000390964 122 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RNU2-49P-201ENST00000410666 184 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RNU6-193P-201ENST00000410977 107 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 RPS3AP3-201ENST00000411933 242 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 AC092809.3-201ENST00000415453 231 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.25□□□□□ -2.05
SKA3Q8IX90 NUP35P1-201ENST00000422734 947 ntBASIC2.25□□□□□ -2.05
SKA3Q8IX90 SKA2P1-201ENST00000425592 390 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms