Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC9P31274 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC9P31274 AL136164.4-201ENST00000625013 2135 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC9P31274 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HOXC9P31274 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
HOXC9P31274 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HOXC9P31274 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HOXC9P31274 MTND5P29-201ENST00000458676 1807 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC9P31274 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC9P31274 AC002546.1-201ENST00000588041 2504 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AC016717.2-201ENST00000609089 5141 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 CR848007.1-201ENST00000442354 1699 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 RNU6-641P-201ENST00000384006 107 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 RNU6-1215P-201ENST00000384441 102 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC9P31274 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC9P31274 AL139415.2-201ENST00000431968 163 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC9P31274 MTCYBP1-201ENST00000454315 1119 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC9P31274 SNORD97-201ENST00000459187 142 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 snoU13.15-201ENST00000459407 104 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC9P31274 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
HOXC9P31274 AC108078.1-201ENST00000508073 725 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AC091133.4-201ENST00000511142 308 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXC9P31274 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXC9P31274 AC002545.1-201ENST00000592511 181 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 DEFB131E-202ENST00000602581 683 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AC012119.1-201ENST00000603184 222 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AC046143.2-201ENST00000609789 160 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 FRG1KP-201ENST00000623592 341 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 AL359740.1-201ENST00000624340 592 ntBASIC3.28□□□□□ -1.88
HOXC9P31274 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC9P31274 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC9P31274 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXC9P31274 AC069528.2-201ENST00000624849 1991 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.27□□□□□ -1.89
HOXC9P31274 HSPE1P11-201ENST00000339579 310 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 RNU5E-6P-201ENST00000365574 115 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 MIR1290-201ENST00000408735 78 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 RNA5SP425-201ENST00000410336 112 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 RAC1P6-201ENST00000423911 575 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC073464.1-201ENST00000429823 534 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 MTCO2P11-201ENST00000431069 680 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 snoU13.26-201ENST00000459452 105 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 RPL36AP51-201ENST00000487216 318 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC007182.2-201ENST00000489251 402 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXC9P31274 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXC9P31274 NRON-201ENST00000517270 370 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXC9P31274 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXC9P31274 AC016957.1-201ENST00000534895 309 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXC9P31274 AL163153.1-201ENST00000554223 283 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 MIR4474-201ENST00000579189 78 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC098848.2-201ENST00000588023 330 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXC9P31274 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXC9P31274 AL022154.1-201ENST00000604698 785 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC013562.2-201ENST00000611632 603 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AC107871.2-201ENST00000612894 502 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AL390240.1-201ENST00000612950 384 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXC9P31274 AC099654.12-201ENST00000639868 649 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 SDAD1P2-201ENST00000441308 2028 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 ZNF826P-207ENST00000622273 1910 ntBASIC3.27□□□□□ -1.89
HOXC9P31274 AL353746.1-201ENST00000566293 6881 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXC9P31274 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
HOXC9P31274 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC9P31274 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC9P31274 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HOXC9P31274 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 RNU6-192P-201ENST00000391253 100 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AL591034.1-201ENST00000407447 340 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 BTF3L4P3-201ENST00000418879 476 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 ZNF885P-201ENST00000420174 1098 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AL451054.2-201ENST00000420896 202 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 UBE2D3P2-201ENST00000424409 445 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AL356867.1-201ENST00000429623 299 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 GPR143P-201ENST00000434155 205 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.26□□□□□ -1.89
HOXC9P31274 AC020550.1-201ENST00000447385 163 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.26□□□□□ -1.89
HOXC9P31274 RPL9P6-201ENST00000492764 598 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC023194.1-201ENST00000493084 308 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC9P31274 TTC39CP1-201ENST00000512513 755 ntBASIC3.26□□□□□ -1.89
HOXC9P31274 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXC9P31274 SCARNA15.2-201ENST00000516409 127 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms