Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 Y_RNA.615-201ENST00000410769 117 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 PIGFP3-201ENST00000441918 722 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 RPL21P41-201ENST00000459863 264 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 KC877373.1-201ENST00000479066 408 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 Y_RNA.654-201ENST00000497848 106 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC114786.4-201ENST00000508771 728 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 CASP1P1-201ENST00000526345 212 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 PSMA3P-201ENST00000555485 635 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 MIR1273C-201ENST00000578669 77 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 UBE2V2P2-201ENST00000587677 504 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC011712.1-201ENST00000588959 234 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC136601.2-201ENST00000604356 474 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 U3.45-201ENST00000607547 219 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC090617.10-201ENST00000624308 134 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AP003400.5-201ENST00000624827 617 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 Z99571.1-201ENST00000636677 394 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 AC100810.6-201ENST00000638068 285 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 ZNF807-201ENST00000328088 1707 ntBASIC3.27□□□□□ -1.89
TCRBV7S3A2A0A539 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC022336.2-201ENST00000568966 2538 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RNU6-715P-201ENST00000365204 103 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RNU6-434P-201ENST00000384376 107 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RNU6-393P-201ENST00000384475 107 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 MIR554-201ENST00000384874 96 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 SNORA16.2-201ENST00000390991 127 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 SNORD70.1-201ENST00000391007 85 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC009161.1-201ENST00000417306 376 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AL645937.1-202ENST00000421799 937 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 MTCO3P46-201ENST00000425787 232 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC007919.1-201ENST00000429380 217 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RPL23AP69-201ENST00000431134 458 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 GPM6BP2-201ENST00000432046 144 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 GPM6BP1-201ENST00000446387 144 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AL671855.1-201ENST00000446875 1203 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC007547.1-201ENST00000462177 490 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RPL9P32-201ENST00000464118 620 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RPL21P93-201ENST00000480465 489 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC009901.1-201ENST00000506703 541 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 HMGB3P15-201ENST00000507326 574 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC098799.2-201ENST00000509466 868 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC046134.1-201ENST00000514454 666 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RNA5SP290-201ENST00000517133 127 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RNU6-1315P-201ENST00000517187 99 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AP003122.3-201ENST00000526316 255 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC084851.1-201ENST00000529105 249 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 SYF2P1-201ENST00000550658 413 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 AC092807.2-201ENST00000609367 243 ntBASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
TCRBV7S3A2A0A539 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 AC106871.1-201ENST00000568324 3102 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 Y_RNA.126-201ENST00000363382 111 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 Y_RNA.378-201ENST00000365652 113 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 RNU6-767P-201ENST00000384132 107 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 MIR134-201ENST00000385258 73 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 AL139039.1-201ENST00000401900 692 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 RNU6-1148P-201ENST00000410992 104 ntBASIC3.25□□□□□ -1.89
TCRBV7S3A2A0A539 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms