Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.58□□□□□ -2
ATG4BQ9Y4P1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.58□□□□□ -2
ATG4BQ9Y4P1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 ELL2P3-201ENST00000457883 1602 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 FGF7P2-201ENST00000332473 296 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 SNORD56.2-201ENST00000363242 71 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU4-1-201ENST00000363925 141 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU6-14P-201ENST00000384630 106 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 MIR627-201ENST00000384979 97 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU6-750P-201ENST00000390946 107 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RN7SKP142-201ENST00000411236 328 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU6-195P-201ENST00000411352 109 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC127391.1-201ENST00000411737 98 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RPL7P37-201ENST00000425095 738 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC137499.1-201ENST00000427602 88 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 HMGB3P12-201ENST00000438745 556 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL022238.1-201ENST00000442557 355 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 MTND6P13-201ENST00000443510 523 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 MTND2P4-201ENST00000445034 1004 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AP000936.2-201ENST00000447151 681 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 SNORA59A-201ENST00000459326 152 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 MTCO2P29-201ENST00000465212 189 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC004924.1-201ENST00000480160 781 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RPS27AP10-201ENST00000496103 208 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 NDUFB4P2-201ENST00000509515 391 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU7-51P-201ENST00000516560 62 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU6-1092P-201ENST00000516955 87 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNU2-46P-201ENST00000517038 113 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 RNA5SP165-201ENST00000517142 115 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 GLYCAM1-201ENST00000546596 285 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC138761.3-201ENST00000579993 334 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL355877.2-201ENST00000603670 358 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 ATP1B3P1-201ENST00000605365 821 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL133173.2-201ENST00000614270 90 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AC007998.5-201ENST00000622938 237 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 AL603839.4-201ENST00000624658 1005 ntBASIC2.57□□□□□ -2
ATG4BQ9Y4P1 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.57□□□□□ -2
ATG4BQ9Y4P1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RNU5E-6P-201ENST00000365574 115 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SMIM11P1-201ENST00000369586 178 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 MIR1302-8-201ENST00000408342 128 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RNA5SP21-201ENST00000410917 96 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 AC023141.4-201ENST00000412031 328 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SKA2P1-201ENST00000425592 390 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 AL033528.1-201ENST00000453780 140 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RNU6-953P-201ENST00000459154 107 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 snoU109.1-201ENST00000459339 135 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RPS27AP9-201ENST00000477681 438 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RPS29P20-201ENST00000489592 171 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RPL39P36-201ENST00000490784 156 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 Y_RNA.695-201ENST00000516715 107 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 RNU6-703P-201ENST00000516946 107 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SNORD19.2-201ENST00000516978 73 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SCARNA11.3-201ENST00000517276 130 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 HMGB1P41-201ENST00000520234 440 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SEPT7P9-203ENST00000604116 343 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 AL358072.1-201ENST00000604156 575 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 CR381653.2-201ENST00000624041 768 ntBASIC2.56□□□□□ -2
ATG4BQ9Y4P1 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.56□□□□□ -2
ATG4BQ9Y4P1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RNU6-39P-201ENST00000384344 107 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RPL23AP32-201ENST00000395315 459 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RPS3AP36-201ENST00000398190 775 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AL139095.1-201ENST00000404326 391 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RNU2-8P-201ENST00000410727 190 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RNU2-25P-201ENST00000411041 191 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 ISCA1P6-201ENST00000427740 390 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RPL36AP53-201ENST00000432891 316 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC104850.1-201ENST00000435940 476 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 PGBD4P3-201ENST00000440731 581 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 OSTCP8-201ENST00000445117 448 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.55□□□□□ -2
ATG4BQ9Y4P1 RNA5SP269-201ENST00000459032 137 ntBASIC2.55□□□□□ -2
ATG4BQ9Y4P1 AC107626.1-201ENST00000471084 183 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms