Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 BTF3P12-201ENST00000519620 469 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 OR11H5P-201ENST00000554039 926 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 MIR15A-201ENST00000607334 83 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC090132.2-201ENST00000615881 347 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC073476.4-201ENST00000628409 72 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 Y_RNA.126-201ENST00000363382 111 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-741P-201ENST00000383889 107 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-393P-201ENST00000384475 107 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 MIR301A-201ENST00000385261 86 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-328P-201ENST00000390887 106 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 MTND3P8-201ENST00000412909 339 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 USP9YP20-201ENST00000419224 558 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RPS15AP27-201ENST00000449183 343 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RPL31P60-201ENST00000478450 367 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 CCDC34P1-201ENST00000507441 517 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC079140.5-201ENST00000507882 310 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 FCF1P8-201ENST00000510322 597 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RPL7P20-201ENST00000520308 745 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 IGKV2D-19-201ENST00000523346 262 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AP001804.3-201ENST00000525146 880 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC005476.1-201ENST00000554427 397 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC037471.2-201ENST00000564941 598 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC106900.2-201ENST00000604994 317 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AL022345.1-201ENST00000607292 135 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC069234.5-201ENST00000611056 416 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 uc_338.5-201ENST00000611839 155 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC010733.2-201ENST00000589496 5702 ntBASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.95□□□□□ -1.78
LIMCH1Q9UPQ0 AC073544.1-201ENST00000600110 1595 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 Y_RNA.11-201ENST00000362375 109 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 RNU4-35P-201ENST00000362588 141 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 Y_RNA.378-201ENST00000365652 113 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 Y_RNA.534-201ENST00000384599 112 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 SNORD70.1-201ENST00000391007 85 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 POLHP1-201ENST00000411806 470 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 Z85995.1-201ENST00000415547 335 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC091390.3-201ENST00000426478 338 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC073063.1-201ENST00000434352 607 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC009237.8-201ENST00000445492 379 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AL136097.1-201ENST00000456945 913 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 SNORA64.4-201ENST00000516632 81 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC107953.1-201ENST00000522216 297 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 RAB11AP2-201ENST00000545905 639 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 MTCO3P23-201ENST00000561363 289 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC074050.1-201ENST00000563247 211 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 ZNF192P1-203ENST00000565888 810 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 MIR5692A1-201ENST00000580523 69 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AL117336.2-201ENST00000602435 335 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 C8orf59P2-201ENST00000603441 271 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 AC098826.3-201ENST00000603823 466 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 Z82243.1-201ENST00000609432 473 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 U2.17-201ENST00000611454 95 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 SNORD39.4-201ENST00000620099 78 ntBASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
LIMCH1Q9UPQ0 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 SNORD81.2-201ENST00000365153 76 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 EIF4E2P1-201ENST00000393781 255 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 AL139397.2-201ENST00000404529 772 ntBASIC3.93□□□□□ -1.78
LIMCH1Q9UPQ0 SNORA11-201ENST00000408789 128 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms