Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RPEP5-201ENST00000441137 268 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 HMGN2P21-201ENST00000447764 270 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 RN7SL817P-201ENST00000480777 288 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 RNU1-6P-201ENST00000516290 144 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 RNU6-1256P-201ENST00000516539 103 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 RNU6-111P-201ENST00000517179 105 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 IGKV1-32-201ENST00000519290 311 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 MIR5696-201ENST00000578474 85 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC012433.1-201ENST00000588916 398 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AL645944.1-201ENST00000603857 493 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC009314.1-201ENST00000603871 304 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC007390.2-201ENST00000606229 3803 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AL731566.2-201ENST00000618971 317 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC140113.4-201ENST00000622087 222 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 AC243829.7-201ENST00000633081 225 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 SDAD1P1-202ENST00000524156 2051 ntBASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.68□□□□□ -1.66
TRIM56Q9BRZ2 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 U3.42-201ENST00000408746 214 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 CYP4F29P-201ENST00000420685 446 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AC096920.1-201ENST00000423991 241 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 TOMM20P4-201ENST00000427861 435 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AC004383.1-201ENST00000438135 289 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RPS5P7-201ENST00000456664 608 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RPS29P33-201ENST00000456717 146 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RPL7AP28-201ENST00000464513 571 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RN7SL738P-201ENST00000470264 297 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RPL30P10-201ENST00000488148 337 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RPL36AP41-201ENST00000493820 306 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 AC008958.1-201ENST00000511047 682 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RNA5SP290-201ENST00000517133 127 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 MIR8076-201ENST00000611401 83 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
TRIM56Q9BRZ2 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 RNU1-20P-201ENST00000363314 162 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 Y_RNA.555-201ENST00000384673 110 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AL022722.2-201ENST00000402519 180 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 PIGPP3-201ENST00000425307 415 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC087650.1-201ENST00000431445 468 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AL627311.1-201ENST00000431514 115 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC011753.3-201ENST00000443436 406 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 SNORA31.6-201ENST00000516241 130 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 RN7SKP92-201ENST00000517266 244 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC004024.1-201ENST00000549244 247 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 MIR378J-201ENST00000611988 109 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC137590.2-201ENST00000619709 240 ntBASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TRIM56Q9BRZ2 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 AC139713.2-214ENST00000642059 1811 ntBASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 AC008568.2-201ENST00000623862 2313 ntBASIC4.65□□□□□ -1.66
TRIM56Q9BRZ2 Y_RNA.27-201ENST00000362540 103 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms