Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL671309.1-201ENST00000603750 544 ntBASIC1.21□□□□□ -2.22
CHD3Q12873 DUXAP10-204ENST00000612052 616 ntBASIC1.21□□□□□ -2.22
CHD3Q12873 AC004852.3-201ENST00000614131 326 ntBASIC1.21□□□□□ -2.22
CHD3Q12873 AL359854.1-201ENST00000614203 1594 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
CHD3Q12873 MT-TC-201ENST00000387405 66 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 HMGB1P49-201ENST00000418882 569 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.2□□□□□ -2.22
CHD3Q12873 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD3Q12873 FAM204CP-201ENST00000424489 642 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.2□□□□□ -2.22
CHD3Q12873 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD3Q12873 RPL31P41-201ENST00000477967 372 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 SNORA31.22-201ENST00000517204 135 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD3Q12873 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.2□□□□□ -2.22
CHD3Q12873 AC080013.4-201ENST00000607624 649 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 uc_338.14-201ENST00000613162 166 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC025048.6-202ENST00000627667 438 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
CHD3Q12873 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.2□□□□□ -2.22
CHD3Q12873 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
CHD3Q12873 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
CHD3Q12873 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.2□□□□□ -2.22
CHD3Q12873 RNU6-19P-201ENST00000384718 107 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 RNU6-796P-201ENST00000391086 107 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AL589655.1-201ENST00000405398 482 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 MIR548J-201ENST00000408833 112 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC092573.2-201ENST00000434546 243 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 NANOGP2-201ENST00000435391 727 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 RPS15AP5-201ENST00000436276 388 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
CHD3Q12873 RNU7-23P-201ENST00000459465 62 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 RPL21P47-201ENST00000483696 477 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC138853.1-201ENST00000503549 823 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC023141.11-201ENST00000508864 202 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD3Q12873 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD3Q12873 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
CHD3Q12873 AC118273.2-201ENST00000532092 465 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.2□□□□□ -2.22
CHD3Q12873 AC090132.2-201ENST00000615881 347 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AC095038.3-201ENST00000634439 195 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 MIR4275-201ENST00000636486 87 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 U2.21-201ENST00000637295 81 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.2□□□□□ -2.22
CHD3Q12873 AC010329.5-201ENST00000623497 2174 ntBASIC1.2□□□□□ -2.22
CHD3Q12873 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CHD3Q12873 RNU6-1035P-201ENST00000384477 107 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 RN7SKP158-201ENST00000410453 326 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 RNU2-42P-201ENST00000410697 113 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD3Q12873 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD3Q12873 KLF3P2-201ENST00000465138 268 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD3Q12873 RNU7-193P-201ENST00000516723 65 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 RNU6-928P-201ENST00000516876 104 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC1.19□□□□□ -2.22
CHD3Q12873 DUXAP1-201ENST00000556632 463 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.19□□□□□ -2.22
CHD3Q12873 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.19□□□□□ -2.22
CHD3Q12873 MTATP6P3-201ENST00000581686 676 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.19□□□□□ -2.22
CHD3Q12873 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.19□□□□□ -2.22
CHD3Q12873 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CHD3Q12873 RMST_10.1-201ENST00000616309 154 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
CHD3Q12873 AC025263.3-201ENST00000622965 1396 ntBASIC1.19□□□□□ -2.22
CHD3Q12873 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
CHD3Q12873 RNU1-93P-201ENST00000364704 169 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 SNORA23-201ENST00000365128 182 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 RNU6-1032P-201ENST00000384100 107 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
CHD3Q12873 AC068050.1-201ENST00000394891 380 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 CCNG1P1-201ENST00000406783 885 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 TPTE2P1-204ENST00000435256 593 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC241584.1-201ENST00000438469 1241 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC002542.1-201ENST00000440683 193 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC1.18□□□□□ -2.22
CHD3Q12873 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC1.18□□□□□ -2.22
CHD3Q12873 MTCYBP18-201ENST00000501056 747 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CHD3Q12873 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 AC096745.1-201ENST00000509945 370 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 AP003033.1-201ENST00000527244 415 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 LSM6P2-201ENST00000552208 177 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 ANKRD36BP2-206ENST00000575193 1245 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AC005730.3-201ENST00000583067 366 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.18□□□□□ -2.22
CHD3Q12873 AC040174.2-201ENST00000602701 465 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AP003973.1-201ENST00000604639 691 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL139344.1-201ENST00000605228 195 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 CDC27P3-201ENST00000635418 1910 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CHD3Q12873 RNU1-72P-201ENST00000362976 153 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 MIR514A1-201ENST00000385133 98 ntBASIC1.18□□□□□ -2.22
CHD3Q12873 AL139098.1-201ENST00000407291 389 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms