Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.73□□□□□ -1.97
SOX3P41225 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.73□□□□□ -1.97
SOX3P41225 AC034105.3-201ENST00000565294 442 ntBASIC2.73□□□□□ -1.97
SOX3P41225 MIR4474-201ENST00000579189 78 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AL133393.1-201ENST00000603277 287 ntBASIC2.73□□□□□ -1.97
SOX3P41225 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SOX3P41225 AC068831.7-201ENST00000616954 363 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AC002076.2-201ENST00000617362 122 ntBASIC2.73□□□□□ -1.97
SOX3P41225 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.73□□□□□ -1.97
SOX3P41225 MTND5P42-201ENST00000637720 498 ntBASIC2.73□□□□□ -1.97
SOX3P41225 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SOX3P41225 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SOX3P41225 AL161431.1-201ENST00000618966 4205 ntBASIC2.73□□□□□ -1.97
SOX3P41225 MTND5P17-201ENST00000418405 1603 ntBASIC2.72□□□□□ -1.97
SOX3P41225 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
SOX3P41225 UBE2L2-201ENST00000254302 429 ntBASIC2.72□□□□□ -1.97
SOX3P41225 RNU6-1120P-201ENST00000362988 108 ntBASIC2.72□□□□□ -1.97
SOX3P41225 Y_RNA.367-201ENST00000365544 101 ntBASIC2.72□□□□□ -1.97
SOX3P41225 SNORA24.1-201ENST00000384401 135 ntBASIC2.72□□□□□ -1.97
SOX3P41225 Y_RNA.505-201ENST00000384489 102 ntBASIC2.72□□□□□ -1.97
SOX3P41225 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
SOX3P41225 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SOX3P41225 RNU4-55P-201ENST00000410731 137 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.72□□□□□ -1.97
SOX3P41225 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.72□□□□□ -1.97
SOX3P41225 AC007919.1-201ENST00000429380 217 ntBASIC2.72□□□□□ -1.97
SOX3P41225 MTND3P21-201ENST00000433774 331 ntBASIC2.72□□□□□ -1.97
SOX3P41225 RPS15AP9-201ENST00000439856 381 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.72□□□□□ -1.97
SOX3P41225 PIGFP3-201ENST00000441918 722 ntBASIC2.72□□□□□ -1.97
SOX3P41225 RPS24P13-201ENST00000442520 397 ntBASIC2.72□□□□□ -1.97
SOX3P41225 PSPHP1-201ENST00000450062 261 ntBASIC2.72□□□□□ -1.97
SOX3P41225 RNU6-420P-201ENST00000458780 107 ntBASIC2.72□□□□□ -1.97
SOX3P41225 RPL9P33-201ENST00000484311 566 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC079382.1-201ENST00000493346 557 ntBASIC2.72□□□□□ -1.97
SOX3P41225 SCGB1D5P-201ENST00000515134 247 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AP001646.1-201ENST00000527936 915 ntBASIC2.72□□□□□ -1.97
SOX3P41225 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.72□□□□□ -1.97
SOX3P41225 AL359212.1-201ENST00000556608 614 ntBASIC2.72□□□□□ -1.97
SOX3P41225 MTCO3P24-201ENST00000572729 782 ntBASIC2.72□□□□□ -1.97
SOX3P41225 LARP7P3-201ENST00000579888 337 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC080078.2-201ENST00000603766 501 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC098826.3-201ENST00000603823 466 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC025449.1-201ENST00000603896 529 ntBASIC2.72□□□□□ -1.97
SOX3P41225 HSPE1P7-201ENST00000604681 321 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC008962.1-201ENST00000605729 304 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC017083.3-201ENST00000609955 700 ntBASIC2.72□□□□□ -1.97
SOX3P41225 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC093648.1-201ENST00000623546 606 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC110774.1-201ENST00000623567 2018 ntBASIC2.72□□□□□ -1.97
SOX3P41225 AC005609.4-201ENST00000625071 447 ntBASIC2.72□□□□□ -1.97
SOX3P41225 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.72□□□□□ -1.97
SOX3P41225 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.72□□□□□ -1.97
SOX3P41225 MIR6863-201ENST00000636112 90 ntBASIC2.72□□□□□ -1.97
SOX3P41225 OR5H6-203ENST00000642105 978 ntBASIC2.72□□□□□ -1.97
SOX3P41225 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.72□□□□□ -1.97
SOX3P41225 AL365361.1-201ENST00000566942 3481 ntBASIC2.72□□□□□ -1.97
SOX3P41225 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
SOX3P41225 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX3P41225 AC009487.2-201ENST00000420969 6821 ntBASIC2.71□□□□□ -1.98
SOX3P41225 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX3P41225 RNU6-288P-201ENST00000363690 104 ntBASIC2.71□□□□□ -1.98
SOX3P41225 RNU6-61P-201ENST00000365528 109 ntBASIC2.71□□□□□ -1.98
SOX3P41225 RNU6-1215P-201ENST00000384441 102 ntBASIC2.71□□□□□ -1.98
SOX3P41225 MIR454-201ENST00000390180 115 ntBASIC2.71□□□□□ -1.98
SOX3P41225 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
SOX3P41225 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX3P41225 RPS12P24-201ENST00000412619 387 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX3P41225 MTCO1P21-201ENST00000416634 589 ntBASIC2.71□□□□□ -1.98
SOX3P41225 BTF3L4P3-201ENST00000418879 476 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX3P41225 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.71□□□□□ -1.98
SOX3P41225 TIMM9P3-201ENST00000428659 274 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL139132.1-201ENST00000431587 344 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL512844.2-201ENST00000433990 593 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AC025750.2-201ENST00000442609 450 ntBASIC2.71□□□□□ -1.98
SOX3P41225 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX3P41225 RPL37P4-201ENST00000448908 268 ntBASIC2.71□□□□□ -1.98
SOX3P41225 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX3P41225 AC006483.1-201ENST00000487308 313 ntBASIC2.71□□□□□ -1.98
SOX3P41225 RPL39P36-201ENST00000490784 156 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AC083906.5-201ENST00000503722 328 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.71□□□□□ -1.98
SOX3P41225 RNU6-506P-201ENST00000516553 94 ntBASIC2.71□□□□□ -1.98
SOX3P41225 RNA5SP471-201ENST00000516971 106 ntBASIC2.71□□□□□ -1.98
SOX3P41225 OR4R1P-201ENST00000529879 463 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AP003034.1-201ENST00000534621 422 ntBASIC2.71□□□□□ -1.98
SOX3P41225 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.71□□□□□ -1.98
SOX3P41225 HMGB1P14-201ENST00000557424 591 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.71□□□□□ -1.98
SOX3P41225 AC136601.2-201ENST00000604356 474 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL161798.1-201ENST00000604630 131 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL137843.1-201ENST00000605078 385 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL021997.1-201ENST00000605757 193 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL627309.6-201ENST00000606857 840 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AC107871.2-201ENST00000612894 502 ntBASIC2.71□□□□□ -1.98
SOX3P41225 AL138880.2-201ENST00000616214 239 ntBASIC2.71□□□□□ -1.98
SOX3P41225 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms