Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU1-59P-201ENST00000364829 162 ntBASIC8.35□□□□□ -1.07
MSH5O43196 AC119751.6-201ENST00000416712 186 ntBASIC8.35□□□□□ -1.07
MSH5O43196 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH5O43196 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC8.35□□□□□ -1.07
MSH5O43196 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH5O43196 AURKAPS2-201ENST00000454983 333 ntBASIC8.35□□□□□ -1.07
MSH5O43196 ACA64.1-201ENST00000459171 127 ntBASIC8.35□□□□□ -1.07
MSH5O43196 RNU6-917P-201ENST00000516294 104 ntBASIC8.35□□□□□ -1.07
MSH5O43196 IGKV3D-25-201ENST00000519599 235 ntBASIC8.35□□□□□ -1.07
MSH5O43196 AC022790.1-201ENST00000522872 204 ntBASIC8.35□□□□□ -1.07
MSH5O43196 RN7SL208P-201ENST00000577964 296 ntBASIC8.35□□□□□ -1.07
MSH5O43196 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
MSH5O43196 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC8.35□□□□□ -1.07
MSH5O43196 U1.25-201ENST00000614085 162 ntBASIC8.35□□□□□ -1.07
MSH5O43196 TCL6_2.1-201ENST00000615162 119 ntBASIC8.35□□□□□ -1.07
MSH5O43196 Six3os1_4.1-201ENST00000615706 324 ntBASIC8.35□□□□□ -1.07
MSH5O43196 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 AC023245.2-201ENST00000530760 2978 ntBASIC8.34□□□□□ -1.07
MSH5O43196 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 AC232271.1-201ENST00000602455 2715 ntBASIC8.34□□□□□ -1.07
MSH5O43196 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 RNU4-13P-201ENST00000364019 141 ntBASIC8.34□□□□□ -1.07
MSH5O43196 RNA5SP284-201ENST00000384547 118 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC007738.1-201ENST00000413892 348 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC8.34□□□□□ -1.07
MSH5O43196 AL356867.1-201ENST00000429623 299 ntBASIC8.34□□□□□ -1.07
MSH5O43196 RAB6C-AS1-202ENST00000433431 123 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC093423.1-201ENST00000440817 142 ntBASIC8.34□□□□□ -1.07
MSH5O43196 RN7SKP238-201ENST00000516483 249 ntBASIC8.34□□□□□ -1.07
MSH5O43196 RNU6-1183P-201ENST00000517054 60 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC011602.1-201ENST00000546484 331 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC027176.1-201ENST00000560204 514 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC007494.1-201ENST00000562293 760 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AC006133.1-201ENST00000617106 264 ntBASIC8.34□□□□□ -1.07
MSH5O43196 MIR6085-201ENST00000618314 110 ntBASIC8.34□□□□□ -1.07
MSH5O43196 UBA3-213ENST00000631029 123 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 LINC02495-203ENST00000636704 242 ntBASIC8.34□□□□□ -1.07
MSH5O43196 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 OFD1P6Y-202ENST00000451061 2724 ntBASIC8.34□□□□□ -1.07
MSH5O43196 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 C4BPAP1-201ENST00000415474 1893 ntBASIC8.34□□□□□ -1.07
MSH5O43196 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSH5O43196 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
MSH5O43196 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSH5O43196 AC010624.4-201ENST00000597606 1351 ntBASIC8.34□□□□□ -1.07
MSH5O43196 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC8.34□□□□□ -1.07
MSH5O43196 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC8.33□□□□□ -1.08
MSH5O43196 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC8.33□□□□□ -1.08
MSH5O43196 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH5O43196 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH5O43196 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH5O43196 GNAS-202ENST00000306090 477 ntTSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 RNU6-729P-201ENST00000384399 107 ntBASIC8.33□□□□□ -1.08
MSH5O43196 Z98745.1-201ENST00000402553 494 ntBASIC8.33□□□□□ -1.08
MSH5O43196 RPL30P4-201ENST00000429309 333 ntBASIC8.33□□□□□ -1.08
MSH5O43196 RPL30P14-201ENST00000482744 348 ntBASIC8.33□□□□□ -1.08
MSH5O43196 RNA5SP271-201ENST00000516700 88 ntBASIC8.33□□□□□ -1.08
MSH5O43196 SNORA31.23-201ENST00000517219 133 ntBASIC8.33□□□□□ -1.08
MSH5O43196 CR383656.8-201ENST00000549046 145 ntBASIC8.33□□□□□ -1.08
MSH5O43196 AC079776.5-201ENST00000641920 211 ntBASIC8.33□□□□□ -1.08
MSH5O43196 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC8.33□□□□□ -1.08
MSH5O43196 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSH5O43196 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSH5O43196 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSH5O43196 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH5O43196 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC8.32□□□□□ -1.08
MSH5O43196 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
MSH5O43196 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH5O43196 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH5O43196 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
MSH5O43196 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
MSH5O43196 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSH5O43196 MIR130B-202ENST00000385018 82 ntBASIC8.32□□□□□ -1.08
MSH5O43196 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC8.32□□□□□ -1.08
MSH5O43196 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC8.32□□□□□ -1.08
MSH5O43196 AC097467.4-201ENST00000605504 141 ntBASIC8.32□□□□□ -1.08
MSH5O43196 AC091979.2-201ENST00000607514 214 ntBASIC8.32□□□□□ -1.08
MSH5O43196 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
MSH5O43196 AC024651.2-201ENST00000562480 2098 ntBASIC8.32□□□□□ -1.08
MSH5O43196 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
MSH5O43196 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC8.32□□□□□ -1.08
MSH5O43196 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC8.31□□□□□ -1.08
MSH5O43196 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSH5O43196 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH5O43196 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC8.31□□□□□ -1.08
MSH5O43196 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms