Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 RPL36AP51-201ENST00000487216 318 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 RNU2-10P-201ENST00000516375 211 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 FAM60DP-201ENST00000524174 632 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 PSMA2P1-201ENST00000526365 646 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC109635.3-201ENST00000529536 185 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC005000.2-201ENST00000605468 310 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC093788.1-201ENST00000609356 927 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 MIR6076-201ENST00000617521 113 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 MAPK10-322ENST00000641485 4530 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.38-201ENST00000362617 102 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RNU6-1284P-201ENST00000363701 100 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RNU6-1322P-201ENST00000364309 107 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.303-201ENST00000364998 94 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 SNORA23-201ENST00000365128 182 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RNU6-76P-201ENST00000384060 104 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 SNORA54-201ENST00000384281 123 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AL136372.1-201ENST00000403060 228 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AL359634.1-202ENST00000404721 284 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AL138885.1-201ENST00000405921 675 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 FAT1P1-201ENST00000406588 507 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RPL21P24-201ENST00000413752 448 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC245291.1-201ENST00000419501 328 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 MED13P1-201ENST00000428342 171 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RPL7P54-201ENST00000438336 674 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RN7SKP272-201ENST00000516988 232 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 RNU6-410P-201ENST00000517006 107 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC009812.2-201ENST00000517657 457 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 HMGB1P41-201ENST00000520234 440 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 HMGN1P28-201ENST00000521340 364 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 HMGB1P6-201ENST00000569046 646 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC024619.4-201ENST00000580924 316 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AL133393.1-201ENST00000603277 287 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC007621.1-201ENST00000604544 437 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AC004832.5-201ENST00000608677 401 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 AL355073.2-201ENST00000612106 557 ntBASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SNX9Q9Y5X1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 MIR22-201ENST00000362190 85 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 RNU6-960P-201ENST00000364056 120 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 SNORA71.1-201ENST00000364523 117 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AL031121.1-201ENST00000406553 254 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 U3.42-201ENST00000408746 214 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 RNU2-9P-201ENST00000410194 145 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 RN7SKP220-201ENST00000410611 288 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 USP9YP27-201ENST00000418455 438 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 HMGB1P31-201ENST00000437242 427 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 HMGB3P12-201ENST00000438745 556 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 WASF1P1-201ENST00000447560 1131 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 RNA5SP310-201ENST00000459084 116 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC008481.1-201ENST00000463278 396 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 RPS26P21-201ENST00000475397 348 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC126389.1-201ENST00000477436 290 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC026801.2-201ENST00000515352 425 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 SNORA40.12-201ENST00000516329 111 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 MTND1P35-201ENST00000526739 508 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AP002404.1-201ENST00000532005 451 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 MED28P6-201ENST00000558776 231 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC068135.2-201ENST00000569293 1028 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC012443.1-201ENST00000605605 231 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC004067.1-201ENST00000608733 700 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 ATP5A1P2-202ENST00000616464 443 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 SNHG22-203ENST00000617833 660 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC093648.1-201ENST00000623546 606 ntBASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.28□□□□□ -1.88
SNX9Q9Y5X1 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms