Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.93□□□□□ -1.78
DDX56Q9NY93 MAPK10-362ENST00000641864 4484 ntBASIC3.93□□□□□ -1.78
DDX56Q9NY93 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
DDX56Q9NY93 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
DDX56Q9NY93 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
DDX56Q9NY93 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 RPL32P3-201ENST00000359025 275 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 RNU6-1283P-201ENST00000365314 105 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 SNORA75B-201ENST00000384053 137 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 RNU1-13P-201ENST00000384499 162 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 MIR10A-201ENST00000385043 110 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 SNORA16.2-201ENST00000390991 127 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 SNORA3.3-201ENST00000408712 125 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 MTND1P2-201ENST00000430604 821 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 AL121601.2-201ENST00000438019 707 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 RBMX2P4-201ENST00000441256 376 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 NFU1P2-201ENST00000448700 469 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 MTND3P16-201ENST00000452205 344 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 RNU7-167P-201ENST00000459160 62 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 MTCO3P9-201ENST00000506989 781 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 MTND3P25-201ENST00000509243 135 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 MTCO3P23-201ENST00000561363 289 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 LRRC37A5P-203ENST00000580181 585 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 AC073539.2-201ENST00000597113 165 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 AL606490.9-201ENST00000603331 271 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 AL355877.2-201ENST00000603670 358 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 MIR6758-201ENST00000620653 63 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 AL031601.2-202ENST00000622650 282 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
DDX56Q9NY93 AC006504.1-201ENST00000562493 3666 ntBASIC3.92□□□□□ -1.78
DDX56Q9NY93 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.92□□□□□ -1.78
DDX56Q9NY93 AC007496.3-201ENST00000624987 3443 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
DDX56Q9NY93 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 SPRR2C-201ENST00000290702 219 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 RNU6-451P-201ENST00000362921 107 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 Y_RNA.231-201ENST00000364358 102 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 SNORD14B-201ENST00000364533 90 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 RNU6-534P-201ENST00000364877 106 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 RNU6-38P-201ENST00000384085 107 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 RPS4XP7-201ENST00000406274 780 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 AL117339.2-201ENST00000430475 180 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 GOT2P5-201ENST00000433995 546 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC006026.2-201ENST00000457376 180 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 RNU6-333P-201ENST00000459117 107 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC011005.2-201ENST00000487324 359 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC113155.1-201ENST00000511141 769 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 SNORD19.2-201ENST00000516978 73 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC069113.1-201ENST00000517763 267 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 CENPUP1-201ENST00000526649 1202 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC010653.1-201ENST00000571108 881 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 KLKP1-201ENST00000595979 403 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
DDX56Q9NY93 MIR6134-201ENST00000617606 109 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
DDX56Q9NY93 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
DDX56Q9NY93 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
DDX56Q9NY93 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.91□□□□□ -1.78
DDX56Q9NY93 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
DDX56Q9NY93 AC099654.7-201ENST00000635788 2127 ntBASIC3.91□□□□□ -1.78
DDX56Q9NY93 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
DDX56Q9NY93 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
DDX56Q9NY93 SNORD3E-201ENST00000362899 217 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 RNA5SP515-201ENST00000364570 118 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 OR9R1P-201ENST00000412200 877 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 RPL7P10-201ENST00000417407 739 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 AL645937.1-202ENST00000421799 937 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 ERLEC1P1-201ENST00000433806 578 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC122718.1-201ENST00000439448 744 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 RPS27P26-201ENST00000494583 239 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 CYCSP30-201ENST00000546447 172 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.9□□□□□ -1.79
DDX56Q9NY93 AL133393.1-201ENST00000603277 287 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 MIR6748-201ENST00000610433 71 ntBASIC3.9□□□□□ -1.79
DDX56Q9NY93 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
DDX56Q9NY93 AC002553.4-201ENST00000616896 331 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms