Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
SMC1BQ8NDV3 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SMC1BQ8NDV3 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 MTND4P35-201ENST00000604257 1375 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 SNORA51.2-201ENST00000364595 132 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 RNA5SP167-201ENST00000365461 116 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 RNA5SP306-201ENST00000411087 107 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC080125.1-201ENST00000414888 684 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 RPL21P66-201ENST00000426566 466 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AL591212.2-201ENST00000433923 257 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 UBE2V1P7-201ENST00000446395 340 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC004801.2-202ENST00000463559 283 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 RN7SL585P-201ENST00000470538 280 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC107953.1-201ENST00000522216 297 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AL121576.1-201ENST00000556055 276 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC002545.1-201ENST00000592511 181 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 AC012603.1-201ENST00000606424 528 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 uc_338.5-201ENST00000611839 155 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
SMC1BQ8NDV3 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 MAPK10-373ENST00000641983 6772 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 RNU6-288P-201ENST00000363690 104 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 RNA5SP189-201ENST00000364920 115 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 SNORD81.2-201ENST00000365153 76 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 Y_RNA.373-201ENST00000365600 103 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 MIR514A1-201ENST00000385133 98 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 MIR607-201ENST00000385241 96 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 SNORD17-201ENST00000390930 237 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 SNORA48.8-201ENST00000391324 134 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 HSPE1P8-201ENST00000406997 288 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 BX323014.1-201ENST00000412876 237 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AL158071.1-201ENST00000430315 461 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AC104058.1-201ENST00000448028 297 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 HMGB3P22-202ENST00000451823 572 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AP000926.1-201ENST00000479573 241 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AC005921.1-201ENST00000510589 286 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AL359697.1-201ENST00000624879 587 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AP000553.6-201ENST00000641242 118 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 OR4G2P-202ENST00000641004 1759 ntBASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SMC1BQ8NDV3 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RNU6-82P-201ENST00000363970 107 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RNU1-140P-201ENST00000365040 165 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RNU6-14P-201ENST00000384630 106 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 CISD1P1-201ENST00000393907 327 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 MIR1261-201ENST00000408659 82 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RPL27AP8-201ENST00000424277 446 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 AL356867.1-201ENST00000429623 299 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 FTH1P6-201ENST00000430768 320 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 AL591704.1-201ENST00000432574 275 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 IFNA20P-201ENST00000436840 528 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 AC107083.1-201ENST00000439643 279 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 Y_RNA.638-201ENST00000459374 113 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 AP000873.1-201ENST00000463987 400 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 Y_RNA.654-201ENST00000497848 106 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 Y_RNA.665-201ENST00000516177 98 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RNU6-927P-201ENST00000516199 100 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 SNORA31.8-201ENST00000516327 108 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RN7SKP256-201ENST00000517201 314 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 RPL7P20-201ENST00000520308 745 ntBASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.31□□□□□ -1.72
SMC1BQ8NDV3 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms