Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 U3.39-201ENST00000408569 239 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.21□□□□□ -1.9
USP43Q70EL4 RPL31P2-201ENST00000413849 377 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AC009161.1-201ENST00000417306 376 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC007283.2-201ENST00000424739 197 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.21□□□□□ -1.9
USP43Q70EL4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.21□□□□□ -1.9
USP43Q70EL4 TTC39CP1-201ENST00000512513 755 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC105417.1-201ENST00000514691 285 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 SNORD60.2-201ENST00000516883 86 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 SNORA25.17-201ENST00000517184 124 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AC026333.2-201ENST00000542164 106 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.21□□□□□ -1.9
USP43Q70EL4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.21□□□□□ -1.9
USP43Q70EL4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.21□□□□□ -1.9
USP43Q70EL4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP43Q70EL4 RPL23AP92-201ENST00000603609 255 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC007179.3-201ENST00000604976 235 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.21□□□□□ -1.9
USP43Q70EL4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC015967.1-201ENST00000619893 476 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 U4.1-201ENST00000620349 87 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.21□□□□□ -1.9
USP43Q70EL4 AC079597.1-201ENST00000624306 508 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AL359757.2-201ENST00000624309 274 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 CYP3A51P-201ENST00000633513 256 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AL034408.1-202ENST00000636088 415 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 AC097714.1-201ENST00000511272 1647 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP43Q70EL4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP43Q70EL4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.21□□□□□ -1.9
USP43Q70EL4 MTND5P28-201ENST00000438005 1594 ntBASIC3.21□□□□□ -1.9
USP43Q70EL4 ZNF285B-201ENST00000561698 1767 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
USP43Q70EL4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
USP43Q70EL4 AC008264.2-201ENST00000610193 3731 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 SNORD56.3-201ENST00000363507 71 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 Y_RNA.301-201ENST00000364990 103 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 SNORA63.7-201ENST00000365579 123 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 SNORA5A-201ENST00000384111 134 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RNY4P36-201ENST00000391116 96 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RPL21P17-201ENST00000397467 475 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RPL7P60-201ENST00000397636 735 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RN7SKP123-201ENST00000410732 291 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.2□□□□□ -1.9
USP43Q70EL4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.2□□□□□ -1.9
USP43Q70EL4 BEND7P1-201ENST00000422058 457 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AL139247.1-201ENST00000422768 325 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.2□□□□□ -1.9
USP43Q70EL4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 AL590233.1-201ENST00000430017 456 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 GPR143P-201ENST00000434155 205 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 TBCAP1-201ENST00000436520 327 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RPL23AP33-201ENST00000442301 452 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 AC104073.1-201ENST00000451988 151 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 U3.44-201ENST00000458938 192 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AC233702.1-201ENST00000482905 502 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RPL31P13-201ENST00000484151 370 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.2□□□□□ -1.9
USP43Q70EL4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.2□□□□□ -1.9
USP43Q70EL4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.2□□□□□ -1.9
USP43Q70EL4 SNORA70.19-201ENST00000516717 90 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 RNA5SP337-201ENST00000517007 109 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.2□□□□□ -1.9
USP43Q70EL4 SNRPGP18-201ENST00000553000 214 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 MIR4680-201ENST00000580906 66 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 MIR4506-201ENST00000584693 77 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 UBE2L4-201ENST00000587688 464 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.2□□□□□ -1.9
USP43Q70EL4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 AL160281.1-201ENST00000605307 311 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 FP236240.3-201ENST00000623061 327 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.2□□□□□ -1.9
USP43Q70EL4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.2□□□□□ -1.9
USP43Q70EL4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 AC006020.1-201ENST00000420179 1854 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP43Q70EL4 AC007656.2-201ENST00000624902 4547 ntBASIC3.2□□□□□ -1.9
USP43Q70EL4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.19□□□□□ -1.9
USP43Q70EL4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP43Q70EL4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP43Q70EL4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms