Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CALM1P1-201ENST00000442082 433 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 SNRPEP8-201ENST00000442866 260 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 MTND5P20-201ENST00000448677 143 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA1P49639 MTND3P10-201ENST00000450967 341 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA1P49639 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA1P49639 PMCHL2-203ENST00000457791 237 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 HMGN2P26-201ENST00000463169 339 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 HMGN1P12-201ENST00000499125 195 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 SUMO2P6-201ENST00000505273 288 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 RNU2-27P-201ENST00000516185 142 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 Y_RNA.702-201ENST00000516843 96 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA1P49639 CYCSP30-201ENST00000546447 172 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA1P49639 BNIP3P6-201ENST00000549284 499 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AC078814.3-201ENST00000553036 491 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.91□□□□□ -1.94
HOXA1P49639 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC2.91□□□□□ -1.94
HOXA1P49639 MIR4286-201ENST00000580651 93 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AC098826.3-201ENST00000603823 466 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AP001486.3-201ENST00000615334 372 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AL136221.1-201ENST00000621449 509 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 AL008636.1-201ENST00000625038 1018 ntBASIC2.91□□□□□ -1.94
HOXA1P49639 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA1P49639 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA1P49639 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA1P49639 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA1P49639 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.9□□□□□ -1.94
HOXA1P49639 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA1P49639 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.95
HOXA1P49639 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA1P49639 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA1P49639 AL353743.1-202ENST00000431724 1695 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA1P49639 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA1P49639 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 HMGB1P27-201ENST00000431429 603 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AC092573.2-201ENST00000434546 243 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 HSPD1P21-201ENST00000436541 245 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 PIGFP3-201ENST00000441918 722 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 CBWD4P-201ENST00000445695 655 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXA1P49639 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXA1P49639 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 KC877373.1-201ENST00000479066 408 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 RPL21P93-201ENST00000480465 489 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AC083904.1-201ENST00000487828 231 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 RPL38P4-201ENST00000502376 214 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 MTCO1P35-201ENST00000515270 228 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 Y_RNA.665-201ENST00000516177 98 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 RNU6-927P-201ENST00000516199 100 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 RNU6-914P-201ENST00000516749 109 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXA1P49639 AC107953.1-201ENST00000522216 297 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.9□□□□□ -1.95
HOXA1P49639 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.9□□□□□ -1.95
HOXA1P49639 HSPE1P5-201ENST00000561489 272 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 MIR3921-201ENST00000577308 85 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AC006077.1-201ENST00000604746 343 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AL590392.1-201ENST00000604960 446 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AC069234.5-201ENST00000611056 416 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AC104260.1-201ENST00000616660 539 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 AL357559.1-201ENST00000622228 274 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 Z99571.1-201ENST00000636677 394 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
HOXA1P49639 AC007656.2-201ENST00000624902 4547 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA1P49639 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
HOXA1P49639 AC002546.1-201ENST00000588041 2504 ntBASIC2.9□□□□□ -1.95
HOXA1P49639 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXA1P49639 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.9□□□□□ -1.95
HOXA1P49639 ZNF285B-201ENST00000561698 1767 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA1P49639 AL137003.2-201ENST00000606924 2538 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA1P49639 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA1P49639 RNU6-1167P-201ENST00000363227 94 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNA5SP42-201ENST00000364278 115 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNU6-522P-201ENST00000364497 107 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 Y_RNA.279-201ENST00000364763 95 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 SNORA4.3-201ENST00000365564 137 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 Y_RNA.373-201ENST00000365600 103 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNU6-1127P-201ENST00000384580 107 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNA5SP317-201ENST00000410176 116 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNA5SP311-201ENST00000411290 116 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 EEF1A1P40-201ENST00000412883 573 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AL353678.1-201ENST00000422735 741 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AL139247.1-201ENST00000422768 325 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 NDUFB4P7-201ENST00000423198 363 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms