Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU4-77P-201ENST00000516692 156 ntBASIC3.9□□□□□ -1.79
MSX2P35548 SNORA31.20-201ENST00000517111 133 ntBASIC3.9□□□□□ -1.79
MSX2P35548 RN7SKP258-201ENST00000517151 304 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.9□□□□□ -1.79
MSX2P35548 ERHP1-201ENST00000523006 310 ntBASIC3.9□□□□□ -1.79
MSX2P35548 TOMM20P2-201ENST00000540082 421 ntBASIC3.9□□□□□ -1.79
MSX2P35548 OR4H12P-201ENST00000556269 907 ntBASIC3.9□□□□□ -1.79
MSX2P35548 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.9□□□□□ -1.79
MSX2P35548 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.9□□□□□ -1.79
MSX2P35548 SNORD58B-201ENST00000607313 66 ntBASIC3.9□□□□□ -1.79
MSX2P35548 MIR7641-1-201ENST00000627518 61 ntBASIC3.9□□□□□ -1.79
MSX2P35548 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.9□□□□□ -1.79
MSX2P35548 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.9□□□□□ -1.79
MSX2P35548 RAD17P1-201ENST00000418130 2042 ntBASIC3.9□□□□□ -1.79
MSX2P35548 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
MSX2P35548 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.9□□□□□ -1.79
MSX2P35548 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSX2P35548 AC091812.1-201ENST00000432235 1948 ntBASIC3.89□□□□□ -1.79
MSX2P35548 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.89□□□□□ -1.79
MSX2P35548 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 AC007685.1-201ENST00000329806 452 ntBASIC3.89□□□□□ -1.79
MSX2P35548 Y_RNA.2-201ENST00000362330 96 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-238P-201ENST00000363313 106 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-371P-201ENST00000364283 108 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNA5SP189-201ENST00000364920 115 ntBASIC3.89□□□□□ -1.79
MSX2P35548 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 Y_RNA.389-201ENST00000383924 113 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-214P-201ENST00000384130 107 ntBASIC3.89□□□□□ -1.79
MSX2P35548 SNORA41-201ENST00000384675 132 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-817P-201ENST00000391083 104 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-1109P-201ENST00000391187 107 ntBASIC3.89□□□□□ -1.79
MSX2P35548 AL590704.1-201ENST00000402856 794 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RPS16P5-201ENST00000406501 404 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU2-43P-201ENST00000410306 190 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-55P-201ENST00000411092 107 ntBASIC3.89□□□□□ -1.79
MSX2P35548 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 MRPS18CP6-201ENST00000423587 223 ntBASIC3.89□□□□□ -1.79
MSX2P35548 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.89□□□□□ -1.79
MSX2P35548 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 RPS24P6-201ENST00000452670 400 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RNU7-187P-201ENST00000458985 68 ntBASIC3.89□□□□□ -1.79
MSX2P35548 RN7SL354P-201ENST00000469282 294 ntBASIC3.89□□□□□ -1.79
MSX2P35548 AC092451.1-201ENST00000480211 153 ntBASIC3.89□□□□□ -1.79
MSX2P35548 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 AC026979.1-201ENST00000492525 396 ntBASIC3.89□□□□□ -1.79
MSX2P35548 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.89□□□□□ -1.79
MSX2P35548 RNU6-475P-201ENST00000516073 104 ntBASIC3.89□□□□□ -1.79
MSX2P35548 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.89□□□□□ -1.79
MSX2P35548 AP004242.1-201ENST00000533701 349 ntBASIC3.89□□□□□ -1.79
MSX2P35548 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.89□□□□□ -1.79
MSX2P35548 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
MSX2P35548 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.89□□□□□ -1.79
MSX2P35548 uc_338.13-201ENST00000618243 179 ntBASIC3.89□□□□□ -1.79
MSX2P35548 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
MSX2P35548 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 AC004925.1-201ENST00000624256 2706 ntBASIC3.89□□□□□ -1.79
MSX2P35548 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX2P35548 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSX2P35548 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSX2P35548 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.88□□□□□ -1.79
MSX2P35548 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
MSX2P35548 RNU6-288P-201ENST00000363690 104 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNU6-379P-201ENST00000363813 104 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNU1-32P-201ENST00000363937 159 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNU6-450P-201ENST00000364654 107 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNVU1-6-201ENST00000364688 164 ntBASIC3.88□□□□□ -1.79
MSX2P35548 SNORA70F-201ENST00000384142 135 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNU6-398P-201ENST00000384143 109 ntBASIC3.88□□□□□ -1.79
MSX2P35548 Y_RNA.485-201ENST00000384395 102 ntBASIC3.88□□□□□ -1.79
MSX2P35548 Y_RNA.556-201ENST00000384677 113 ntBASIC3.88□□□□□ -1.79
MSX2P35548 MIR607-201ENST00000385241 96 ntBASIC3.88□□□□□ -1.79
MSX2P35548 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
MSX2P35548 RNU6-823P-201ENST00000391042 103 ntBASIC3.88□□□□□ -1.79
MSX2P35548 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.88□□□□□ -1.79
MSX2P35548 RNU6-293P-201ENST00000411259 106 ntBASIC3.88□□□□□ -1.79
MSX2P35548 UBE2V1P4-201ENST00000425374 344 ntBASIC3.88□□□□□ -1.79
MSX2P35548 DNAJC19P7-201ENST00000428811 344 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AC097713.2-201ENST00000430199 356 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AL591212.2-201ENST00000433923 257 ntBASIC3.88□□□□□ -1.79
MSX2P35548 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.88□□□□□ -1.79
MSX2P35548 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.88□□□□□ -1.79
MSX2P35548 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.88□□□□□ -1.79
MSX2P35548 RPS11P1-201ENST00000451072 473 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AC112492.4-201ENST00000456549 352 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RPL21P41-201ENST00000459863 264 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AC010285.1-201ENST00000470580 392 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNA5SP73-201ENST00000516744 108 ntBASIC3.88□□□□□ -1.79
MSX2P35548 RNU7-143P-201ENST00000516781 65 ntBASIC3.88□□□□□ -1.79
MSX2P35548 SNORA31.22-201ENST00000517204 135 ntBASIC3.88□□□□□ -1.79
MSX2P35548 Y_RNA.721-201ENST00000517207 102 ntBASIC3.88□□□□□ -1.79
MSX2P35548 IGLVIV-65-201ENST00000517313 360 ntBASIC3.88□□□□□ -1.79
MSX2P35548 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSX2P35548 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms