Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-324P-201ENST00000363957 106 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 RNU4-10P-201ENST00000364383 140 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 RNU6-245P-201ENST00000384020 107 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 SNORA40.5-201ENST00000391061 128 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 RNU6-588P-201ENST00000410281 105 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 RN7SKP61-201ENST00000410642 295 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC096649.2-201ENST00000416186 393 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC007161.1-204ENST00000423039 460 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC5.54□□□□□ -1.52
COL9A1P20849 TMEM183AP1-205ENST00000432739 290 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.54□□□□□ -1.52
COL9A1P20849 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.54□□□□□ -1.52
COL9A1P20849 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.54□□□□□ -1.52
COL9A1P20849 IGKV1-32-201ENST00000519290 311 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC027667.1-201ENST00000545814 304 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 HSPE1P4-201ENST00000550617 308 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 TRAV28-201ENST00000557548 323 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC021231.3-201ENST00000558497 370 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 MIR4715-201ENST00000584117 79 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC006130.2-201ENST00000586202 326 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.54□□□□□ -1.52
COL9A1P20849 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.54□□□□□ -1.52
COL9A1P20849 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC5.54□□□□□ -1.52
COL9A1P20849 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL9A1P20849 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL9A1P20849 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
COL9A1P20849 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL9A1P20849 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL9A1P20849 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.53□□□□□ -1.52
COL9A1P20849 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.53□□□□□ -1.52
COL9A1P20849 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 ZNF702P-202ENST00000434269 1966 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 TEK-202ENST00000406359 3935 ntTSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 RNU6-235P-201ENST00000362644 107 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 RNU6-1141P-201ENST00000364520 107 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 SNORA62.3-201ENST00000365110 153 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 RNU6-1228P-201ENST00000391014 107 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC5.53□□□□□ -1.52
COL9A1P20849 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC5.53□□□□□ -1.52
COL9A1P20849 UBE2CP3-201ENST00000502715 450 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 RNU2-12P-201ENST00000517216 168 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 AC023632.4-201ENST00000517783 191 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.53□□□□□ -1.52
COL9A1P20849 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
COL9A1P20849 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.53□□□□□ -1.52
COL9A1P20849 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.53□□□□□ -1.52
COL9A1P20849 AL445567.2-201ENST00000618935 498 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 AC011944.2-201ENST00000624440 683 ntBASIC5.53□□□□□ -1.52
COL9A1P20849 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL9A1P20849 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.53□□□□□ -1.52
COL9A1P20849 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL9A1P20849 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 STX3-208ENST00000641815 3236 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.52□□□□□ -1.53
COL9A1P20849 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL9A1P20849 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL9A1P20849 RNU6-942P-201ENST00000363002 107 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 RNU6-728P-201ENST00000365375 104 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 RNU6-969P-201ENST00000383900 105 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 SNORA72.4-201ENST00000384174 132 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 AL590762.2-201ENST00000395798 571 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 RNU6-710P-201ENST00000410424 105 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 AC078809.1-201ENST00000427601 140 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 REG1CP-206ENST00000447469 496 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 HMGB3P8-201ENST00000449709 577 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 AC245047.8-201ENST00000456455 284 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 MLLT10P2-201ENST00000506434 249 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 RNA5SP116-201ENST00000516132 98 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
COL9A1P20849 AC137627.1-201ENST00000545761 289 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.52□□□□□ -1.53
COL9A1P20849 LINC00933-203ENST00000559812 219 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 AC112200.1-201ENST00000625015 234 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 snoZ196.1-201ENST00000625269 89 ntBASIC5.52□□□□□ -1.53
COL9A1P20849 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL9A1P20849 SMG1P6-201ENST00000532337 2930 ntBASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms