Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC1.11□□□□□ -2.23
CCDC88BA6NC98 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC88BA6NC98 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.11□□□□□ -2.23
CCDC88BA6NC98 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AC112198.4-201ENST00000515450 351 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 RNA5SP395-201ENST00000516567 118 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 SNORA31.13-201ENST00000516624 135 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AC013244.2-201ENST00000603396 103 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AC103710.4-201ENST00000609301 899 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AC055764.2-201ENST00000610089 670 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 AP003476.1-201ENST00000623984 516 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.11□□□□□ -2.23
CCDC88BA6NC98 SNORA22-201ENST00000383907 134 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 RNU6-198P-201ENST00000384258 104 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 SNORA22C-201ENST00000384614 134 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 RNU2-21P-201ENST00000410368 188 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.1□□□□□ -2.23
CCDC88BA6NC98 KLF3P2-201ENST00000465138 268 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC88BA6NC98 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC88BA6NC98 CYP4A27P-201ENST00000567218 190 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 MTND4LP24-201ENST00000572277 291 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 MIR3609-201ENST00000582661 80 ntBASIC1.1□□□□□ -2.23
CCDC88BA6NC98 MIR26B-201ENST00000362251 77 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 RNU6-670P-201ENST00000364312 104 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 RPL30P13-201ENST00000418873 348 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 AC096920.1-201ENST00000423991 241 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.09□□□□□ -2.24
CCDC88BA6NC98 AC087588.1-201ENST00000462203 316 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 MRPS36P2-201ENST00000512569 299 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 AP002791.1-201ENST00000623291 381 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 ELL2P3-201ENST00000457883 1602 ntBASIC1.09□□□□□ -2.24
CCDC88BA6NC98 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
CCDC88BA6NC98 Y_RNA.458-201ENST00000384240 102 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AL591704.1-201ENST00000432574 275 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC079776.3-201ENST00000450665 370 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC88BA6NC98 RNU6-496P-201ENST00000516145 99 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC88BA6NC98 NIFKP8-201ENST00000560500 874 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC103810.8-201ENST00000607347 118 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC009229.3-201ENST00000608056 282 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC090970.3-201ENST00000612566 866 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 AC087821.2-201ENST00000637086 450 ntBASIC1.08□□□□□ -2.24
CCDC88BA6NC98 CBX3P1-201ENST00000325243 554 ntBASIC1.07□□□□□ -2.24
CCDC88BA6NC98 RNA5SP347-201ENST00000362445 119 ntBASIC1.07□□□□□ -2.24
CCDC88BA6NC98 AL158823.1-201ENST00000418441 478 ntBASIC1.07□□□□□ -2.24
CCDC88BA6NC98 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC88BA6NC98 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC88BA6NC98 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88BA6NC98 AC106900.2-201ENST00000604994 317 ntBASIC1.07□□□□□ -2.24
CCDC88BA6NC98 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC88BA6NC98 AC098934.3-201ENST00000430450 190 ntBASIC1.06□□□□□ -2.24
CCDC88BA6NC98 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC88BA6NC98 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC88BA6NC98 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC88BA6NC98 LARP7P4-201ENST00000481075 878 ntBASIC1.06□□□□□ -2.24
CCDC88BA6NC98 AC104229.1-201ENST00000561364 255 ntBASIC1.06□□□□□ -2.24
CCDC88BA6NC98 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.06□□□□□ -2.24
CCDC88BA6NC98 DUXAP11-201ENST00000603858 526 ntBASIC1.06□□□□□ -2.24
CCDC88BA6NC98 AP003485.1-201ENST00000625093 753 ntBASIC1.06□□□□□ -2.24
CCDC88BA6NC98 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC88BA6NC98 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 FAM206BP-201ENST00000510179 541 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AP003484.1-201ENST00000530974 250 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 ZNF29P-201ENST00000225587 168 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 RNU5D-1-201ENST00000363299 116 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 RPL39P29-201ENST00000447779 157 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AC139453.3-201ENST00000493276 369 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 RPL30P5-201ENST00000494923 336 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AL031775.1-201ENST00000607014 887 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 AL118508.4-201ENST00000624142 1176 ntBASIC1.05□□□□□ -2.24
CCDC88BA6NC98 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.04□□□□□ -2.24
CCDC88BA6NC98 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
CCDC88BA6NC98 RNA5SP212-201ENST00000391223 107 ntBASIC1.04□□□□□ -2.24
CCDC88BA6NC98 AC079448.1-201ENST00000449377 373 ntBASIC1.04□□□□□ -2.24
CCDC88BA6NC98 LRRC34P2-201ENST00000514850 553 ntBASIC1.04□□□□□ -2.24
CCDC88BA6NC98 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.04□□□□□ -2.24
CCDC88BA6NC98 AP001330.4-201ENST00000604350 154 ntBASIC1.04□□□□□ -2.24
CCDC88BA6NC98 AC025588.2-201ENST00000604851 466 ntBASIC1.04□□□□□ -2.24
CCDC88BA6NC98 MIR2909-201ENST00000617113 69 ntBASIC1.04□□□□□ -2.24
CCDC88BA6NC98 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
CCDC88BA6NC98 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CCDC88BA6NC98 RNU1-72P-201ENST00000362976 153 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 RNU6-666P-201ENST00000363499 107 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 AL358176.2-201ENST00000425769 204 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 AC098614.2-201ENST00000426040 255 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 HMGB1P9-201ENST00000429856 646 ntBASIC1.03□□□□□ -2.24
CCDC88BA6NC98 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms