Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
USP3Q9Y6I4 AC083843.2-201ENST00000568248 6253 ntBASIC4.98□□□□□ -1.61
USP3Q9Y6I4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 Y_RNA.76-201ENST00000362931 109 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 RNU1-82P-201ENST00000390851 165 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 MIR298-201ENST00000401212 88 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AL078601.1-201ENST00000444542 271 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC073264.2-201ENST00000448886 166 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC079168.2-201ENST00000453977 416 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 RPS29P26-201ENST00000477483 171 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 RNU6-861P-201ENST00000516745 106 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 SNORA31.18-201ENST00000517043 134 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 SNORA31.19-201ENST00000517079 126 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AP006289.1-201ENST00000538089 277 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC023824.2-201ENST00000566185 400 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC120057.2-201ENST00000571520 271 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 RMST_6.1-201ENST00000611980 203 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC099669.2-201ENST00000616549 437 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC025031.4-201ENST00000621248 3271 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 AC233981.2-201ENST00000611524 1614 ntBASIC4.97□□□□□ -1.61
USP3Q9Y6I4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP3Q9Y6I4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.61
USP3Q9Y6I4 AC093535.2-201ENST00000624769 2326 ntBASIC4.96□□□□□ -1.61
USP3Q9Y6I4 AL356489.2-201ENST00000566968 3528 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AL590240.1-201ENST00000334118 313 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNU6-336P-201ENST00000364891 107 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNU6-17P-201ENST00000384245 107 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNU6-166P-201ENST00000384371 107 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNU6-102P-201ENST00000384485 104 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNU6-18P-201ENST00000384527 107 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNU5A-5P-201ENST00000411054 116 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 TMSB10P2-201ENST00000416049 131 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AL590383.1-201ENST00000428602 75 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AC006026.2-201ENST00000457376 180 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.662-201ENST00000516028 97 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RN7SL435P-201ENST00000584418 282 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 OR9K1P-202ENST00000641111 3217 ntBASIC4.96□□□□□ -1.62
USP3Q9Y6I4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.96□□□□□ -1.62
USP3Q9Y6I4 AC026523.2-201ENST00000625039 7739 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 ASNSP1-201ENST00000518311 1939 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC007390.2-201ENST00000606229 3803 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 RNU6-704P-201ENST00000364162 103 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 RNU6-741P-201ENST00000383889 107 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 RNA5SP296-201ENST00000410523 111 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AL451074.5-201ENST00000415894 435 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AL390729.2-201ENST00000416137 156 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AC140479.3-201ENST00000418944 1126 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 EIF1AXP1-201ENST00000419267 435 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.95□□□□□ -1.62
USP3Q9Y6I4 Z82188.1-201ENST00000436709 154 ntBASIC4.95□□□□□ -1.62
USP3Q9Y6I4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms