Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CHMP3Q9Y3E7 EOGT-210ENST00000615922 1931 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 OR56A5-201ENST00000340110 738 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 U3.42-201ENST00000408746 214 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC063979.1-201ENST00000415539 377 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 DAP3P1-201ENST00000441522 278 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AL590664.1-201ENST00000448065 339 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC009963.2-201ENST00000453431 138 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 RPL39P38-201ENST00000467018 153 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC069499.1-201ENST00000489433 509 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 HMGB1P35-201ENST00000503360 598 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC093852.1-201ENST00000503587 266 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC025465.3-201ENST00000510570 311 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 TRAV32-201ENST00000553993 340 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC025884.1-201ENST00000556034 378 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC007224.1-201ENST00000564410 144 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 MIR4273-201ENST00000582824 84 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 MIR548AC-201ENST00000585049 88 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AL591516.1-201ENST00000611326 274 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 AL023881.1-201ENST00000621088 301 ntBASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP3Q9Y3E7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 MTND5P6-201ENST00000422338 1798 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RNA5SP307-201ENST00000362863 116 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.105-201ENST00000363182 111 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-770P-201ENST00000363929 105 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RNU1-44P-201ENST00000384453 163 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-607P-201ENST00000411283 108 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 MTND5P15-201ENST00000434246 349 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RANP8-201ENST00000444720 713 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RN7SL691P-201ENST00000494487 301 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 GZMAP1-201ENST00000503054 631 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AC026402.1-201ENST00000513642 170 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-138P-201ENST00000515952 107 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RN7SKP21-201ENST00000516503 220 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 RNU6-897P-201ENST00000517135 105 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 BNIP3P5-201ENST00000562290 498 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AL020997.2-201ENST00000602607 184 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AC010201.1-201ENST00000605051 540 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AL591034.3-201ENST00000605511 685 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AL121917.1-203ENST00000605534 577 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AC064801.1-201ENST00000612025 407 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 SDR42E1P4-201ENST00000620894 481 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 AL592437.2-201ENST00000421655 2434 ntBASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP3Q9Y3E7 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 RNU1-14P-201ENST00000362759 152 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 RNA5SP28-201ENST00000363841 119 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.515-201ENST00000384535 112 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 Y_RNA.533-201ENST00000384596 114 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 RPS15AP6-201ENST00000420703 385 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AL157831.1-201ENST00000426134 473 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AL451062.2-201ENST00000427515 271 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 snoU13.3-201ENST00000459441 104 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 ACA59.1-201ENST00000515966 143 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 RNU1-86P-201ENST00000516108 154 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 RNU1-107P-201ENST00000516617 154 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 SNORA40.15-201ENST00000516884 107 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AC022790.1-201ENST00000522872 204 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 VN1R91P-201ENST00000594377 169 ntBASIC5.36□□□□□ -1.55
CHMP3Q9Y3E7 AL159153.1-201ENST00000619688 317 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms